New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4022445	31 (0.500)	4 (0.070)	4/324	NT	12.5%	intergenic (‑140/+528)	PP_3547/emrB	putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit
	?	AE015451	= 4022451	27 (0.460)					intergenic (‑146/+522)	PP_3547/emrB	putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit

TTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGG  >  AE015451/4022229‑4022651                                                                                                                                                                                                                         |                                                                                                                                                                                                               ttgatcttgatcttgatcttgatcTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTAGGTTACTTTTTGTCGCGTTTGACAAAAAGTg                                                                                                                                                                                               <  2:1015378/234‑1 (MQ=14)                  cttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATCCATGCCCGTCAAGCGCTGAGGCCCCATCCTGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTgacaaaaagtaaccaaaaaacgctgcgctc                                                                                                                                                                            >  1:897070‑M2/1‑206 (MQ=255)                                 ttCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGc                                                                                                                                                                                <  1:540936/217‑1 (MQ=31)                                                                cgcttgacgGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTGTTTGGGTACTTTTTGTCGCGTTTggcaaa                                                                                                                                                                                                    <  1:257993‑M2/162‑7 (MQ=255)                                                                                          aGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCg                                                                                                                                       >  2:265291/1‑201 (MQ=38)                                                                                                    ccccAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGtt                                                                                                                                         >  2:668515/1‑189 (MQ=40)                                                                                                         ggATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGGTTgacaaaaagt                                                                                                                                                                                                <  1:1007734‑M2/129‑11 (MQ=255)                                                                                                                gCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGGTTGACAAGAAGTGACt                                                                                                                                                                                            >  1:398017/1‑126 (MQ=17)                                                                                                                  cTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGCAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAACAAGTGACTCGCCGGAAGGGCGAAAAGGTGAGTCAGCGTCg                                                                                                                                                            >  2:114756/1‑156 (MQ=16)                                                                                                                     cGGGGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAGCCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTgacaaaaag                                                                                                                                                                                                 >  2:352111‑M2/1‑107 (MQ=255)                                                                                                                     cGGCGCGGTCCTGACGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCAtcttgcttcttgcttcttgcttc                                                                                       <  1:322642/222‑1 (MQ=255)                                                                                                                      ggCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCAGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccgg                                                                                                                                              <  2:399266‑M1/166‑67 (MQ=255)                                                                                                                      ggCGCGGTCCTGCAGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCAtcttgcttcttgcttcttgc                                                                                          <  1:776425/218‑1 (MQ=255)                                                                                                                       gcgcGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTg                                                                                                                                                                                               >  2:771638/1‑116 (MQ=33)                                                                                                                       gcgcGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTg                                                                                                                                                                                               <  1:771639/116‑1 (MQ=32)                                                                                                                          cgGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTggg                                                                     <  1:9003/235‑1 (MQ=255)                                                                                                                             tCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCAtcttgcttcttgcttcttgctt                                                                                        <  2:754648/213‑1 (MQ=255)                                                                                                                             tCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCAtcttgcttcttgcttcttgctt                                                                                        >  1:754649/1‑213 (MQ=255)                                                                                                                                 ggcGGGAGCAAGGCGGGAGTGAGGGAACCCCGGGGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTGTTTGGTTACTTTTTGTCGCGTGTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCAtcttgcttcttgcttcttgct                                                                                         <  2:59524/206‑1 (MQ=255)                                                                                                                                  ccGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTgacaaaaagtaaccaaaaaacgctgcgctcccatcatc                                                                                                                                                                    >  1:61523‑M2/1‑94 (MQ=255)                                                                                                                                    gggAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGC‑CAGCGTTTTTTGGTCACTTTTTGTCaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgc                                                                                                                                                        >  2:916685‑M1/1‑85 (MQ=255)                                                                                                                                          aaGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAggg                                                                                                                                                                                 <  2:142741/111‑1 (MQ=32)                                                                                                                                          aaGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAggg                                                                                                                                                                                 >  1:142741/1‑111 (MQ=32)                                                                                                                                          aaGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGAc                                                                                                                       >  1:863439/1‑169 (MQ=40)                                                                                                                                          aaGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAgg                                                    >  1:310238/1‑236 (MQ=255)                                                                                                                                               cGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCgc                                                                                                                                                                                      >  1:110025/1‑100 (MQ=17)                                                                                                                                                    tGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTattcattc                                           <  1:668516/235‑1 (MQ=255)                                                                                                                                                             cccGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAGGTgg                                 <  1:758228/236‑1 (MQ=255)                                                                                                                                                              ccGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTgacaaaaagtaaccaaaaaacgctgcgctcccatcatctggcccctgcgctgcgctccggggttccctcactccggccttgctcccggcaggaccgcgcc                                                                                                      <  2:399266‑M2/166‑101 (MQ=255)                                                                                                                                                               cGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAacg                                                                                                                                                <  2:366906/123‑1 (MQ=37)                                                                                                                                                                    cgcagcgcagGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGTCGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAGGt                                   <  1:228719/227‑1 (MQ=255)                                                                                                                                                                        gcgcagGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTgacaaaaagtgaccaaaaaacgctggctcctatcatccggcccctgcgctacgctccggggttccctcgctccgggcttgctccc                                                                                                                     >  2:916685‑M2/1‑56 (MQ=255)                                                                                                                                                                            agGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAACAAGTGACTAGCCGTAAGGGCGAAAAGTTGAGTCAGCGTCGCCATCGc                                                                                                                                                     >  1:2950/1‑105 (MQ=255)                                                                                                                                                                                gCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGc              <  1:265292/236‑1 (MQ=255)                                                                                                                                                                                    gatgatGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggttccctcactccggccttgctcccgg                                                                                                                  >  1:61523‑M1/1‑38 (MQ=255)                                                                                                                                                                                      tgatgGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGCAGGTatt                                                >  1:1080139/1‑196 (MQ=255)                                                                                                                                                                                           gtaGCGCAGCGTGTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTAttcattca                                          <  2:453651/195‑1 (MQ=255)                                                                                                                                                                                           ggAGCGCAGCGTGTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCTCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACa                                                                                                                          <  2:740727/117‑1 (MQ=255)                                                                                                                                                                                            gAGCGCAGCGTTTTTTGGTTACTTTTTGTCaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggttccctcactccggccttgctcccggcaggaccgcgccgaaggccccaggatggggcctcagcgcttgacgggcatggatgcccgtcacctgcctccgcaaggcctgcgttcggcctcctgaagtcgcgaagatcaag  >  1:897070‑M1/1‑30 (MQ=255)                                                                                                                                                                                                      ttttttGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGCCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAggga                                                  >  1:442544/1‑176 (MQ=255)                                                                                                                                                                                                          ttGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTGCGCAtcttgcttcttgcgt                                                                                               >  2:848401/1‑127 (MQ=255)                                                                                                                                                                                                              ttACTTTTTGTCGCGTTTGACAAAAAGTGCCTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCAtcttgcttcttgcttcttgcttc                                                                                       <  2:735223/133‑1 (MQ=255)                                                                                                                                                                                                                aCTTTTTGTCaaccgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggttccctcactccggccttgctcccggcaggaccgcgccgaaggccccatcc                                                                                         <  1:1007734‑M1/129‑120 (MQ=255)                                                                                                                                                                                                                 cTTTTTGTCaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggctccctcactccggccttgctcccggcaggaccgccccg                                                                                                     >  2:352111‑M1/1‑9 (MQ=255)                                                                                                                                                                                                                    tttGCCaaacgcgacaaaaagtacccaaacaacgctgcgctcccatcatccggcccctgcgctgcgctccggggttccctcactccggccttgctcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcaagcg                                                <  1:257993‑M1/166‑161 (MQ=255)                                                                                                                                                                                                                         |                                                                                                                                                                                                               TTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGG  >  AE015451/4022229‑4022651

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.