Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	2038104	2038420	317	19 [18]	[18] 22	[rffE]	[rffE]

TTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTGGGGCGGGGTTTCAGGAAAGTCTGACGTGCGGAATGTGCATTCCAAGGCAAATCTCTTCGTCGTGATTGTTG  >  AE015451/2037876‑2038239                                                                                                                                                                                                                                    |                                                                                                                                         ttCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAGGCATTTCCCCGACAATTc                                                                                                                                  <  1:883823/236‑1 (MQ=255)              ctacTGATAGGTGGAACTGCCACGAAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCt                                                                                                                        <  1:294432/230‑1 (MQ=255)              cTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCTGa                                                                                                                      <  1:533776/235‑1 (MQ=255)              cTCCTGATAGGTGGAACTGCCACGCAGATCTGTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCTGa                                                                                                                      <  1:779064/235‑1 (MQ=255)                  tGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCTGACTGgc                                                                                                                 <  1:427867/236‑1 (MQ=255)                                 ccACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTc                                                                                                   >  1:986604/1‑235 (MQ=255)                                            tttCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTCGCTTGGTTg                                                                                          <  2:986603/233‑1 (MQ=255)                                                     gACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTCGCTTGGt                                                                                            <  2:204558/222‑1 (MQ=255)                                                                              gTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTgg                                                                        <  2:1027480/217‑1 (MQ=255)                                                                                          gggAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTGGGGCGGGGTTTCAGGAAAGTCTGACGTGc                                            <  1:502529/233‑1 (MQ=255)                                                                                                         cGGCCAGACCGAAGGCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAGGCATTTcccc                                                                                                                                          <  2:6272/124‑1 (MQ=255)                                                                                                                 ccGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTGGGGCGGGGTTTCAGGAAAGTCTGACGTGCGGAATGTGCATTCCa                             <  1:187345/225‑1 (MQ=255)                                                                                                                              gcgTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTGGGGCGGGGTTTCAGGAAAGTCTGACGTGCGGAATGTGCATTCCAAGGCAAAt                     <  2:898212/220‑1 (MQ=255)                                                                                                                                                                      cAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTGGGGCGGGGTTTCAGGAAAGTCTGACGTGCGGAATGTGCATTCCAAGGCAAATCTCTtcg              <  1:951814/187‑1 (MQ=255)                                                                                                                                                                                         aCCAACATGGCGACCCTGTGACGTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTGGGGCGGGGTTTCAGGAAAGTCTGACGTGc                                            <  1:737695/138‑1 (MQ=255)                                                                                                                                                                                         aCCAACATGGCGACCCTGTGACGTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTGGGGCGGGGTTTCAGGAAAGTCTGACGTGc                                            >  2:737694/1‑138 (MQ=255)                                                                                                                                                                                                 ggCGACCCTGTGACGTTATCCCGGGGGCATTGCCCCGACAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTGGGGCGGGGTTTCAGGAAAGTCTGACGTGCGGAATGTGCATTCCAAGGCAAATCTCTTCGTCGTGAttgttg  <  2:54964/172‑1 (MQ=255)                                                                                                                                                                                                         tgtgACGTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTGGGGCGGGGTTTCAGGAAAGTCTGACGTGCGGAATGTGCATTCCAAGGCAAATCTCTTCGTCGTg         <  1:970953/157‑1 (MQ=255)                                                                                                                                                                                                              cGTTATCCCTGAGGCATTGCCCCGCCAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTGGGGCGGGGTTTCAGGAAAGTCTGACGTGCGGAAt                                       <  1:127274/122‑1 (MQ=255)                                                                                                                                                                                                                                    |                                                                                                                                         TTCATGGTAGTTGCTCCTGATAGGTGGAACTGCCACGCAGATCTTTCTCACGGACCAGGGCGGCAGTCGTACACGGGGTGAGAAACCGAGGGAGCTACAAAGCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTGGGGCGGGGTTTCAGGAAAGTCTGACGTGCGGAATGTGCATTCCAAGGCAAATCTCTTCGTCGTGATTGTTG  >  AE015451/2037876‑2038239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑