Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	5858250	5858573	324	19 [18]	[18] 19	PP_5134	conserved protein of unknown function

TACGAAAGCCTGGCGCTGCTGCTGGAAAACGCCCGCCCGGCGCTGCAACGGCTGATCGACGACCAGCAGGCACAGCGTTTGGCACGCCGGCACAGCGGCAAGCGCCTGATCGCCGAACTGCTGCTCGATTGCGCTGCATGCCGGCGCAGTGTCGAGGCCGAACCAGCGGCAGAAGCTCGGGCCATCGAAGCGCTGCGCCAGGACATACGCCAACGAGAACAACGCTGCGTCGAAGCCTTGCTCAAGCTGTATGCCTTCCGCCGCGAGGACGCCCATGCCAGCGACCTGCCGTTGCTGGACGGCCGCTGGGGCGATGACTTGTTCAATCCGGAAACGTTGAAACTGCTGGGC  >  AE015451/5858034‑5858384                                                                                                                                                                                                                        |                                                                                                                                        tACGAAAGCCTGGCGCTGCTGCTGGAAAACGCCCGCCCGGCGCTGCAACGGCTGATCGACGACCAGCAGGCACAGCGTTTGGCACGCCGGCACAGCGGCAAGCGCCTGATCGCCGAACTGCTGCTCGATTGCGCTGCATGCCGGCGCAGTGTCGAGGCCGAACCAGCGGCAGAAGCTCGGGCCATCGAAGCGCTGCGCCAGGACATACGCCAACGAGAACAACGCTGCGTCGa                                                                                                                        <  1:362161/233‑1 (MQ=255)     aaaGCCTGGCGCTGCTGCTGGAAAACGCCCGCCCGGCGCTGCAACGGCTGATCGACGACCAGCAGGCACAGCGTTTGGCACGCCGGCACAGCGGCAAGCGCCTGATCGCCGAACTGCTGCTCGATTGCGCTGCATGCCGGCGCAGTGTCGAGGCCGAACCAGCGGCAGAAGCTCGGGCCATCGAAGCGCTGCGCCAGGACATACGCCAACGAGAACAACGCTGCGTCGAAGCCTTg                                                                                                                 <  1:100724/236‑1 (MQ=255)            ggCGCTGCTGCTGGAAAACGCCCGCCCGGCGCTGCAACGGCTGATCGACGACCAGCAGGCACAGCGTTTGGCACGCCGGCACAGCGGCAAGCGCCTGATCGCCGAACTGCTGCTCGATTGCGCTGCATGCCGGCGCAGTGTCGAGGCCGAACCAGCGGCAGAAGCTCGGGCCATCGAAGCGCTGCGCCAGGACATACGCCAACGAGAACAACGCTGCGTCGAAGCCTTGCTCa                                                                                                             <  1:450567/233‑1 (MQ=255)              cgcTGCTGCTGGAAAACGCCCGCCCGGCGCTGCAACGGCTGATCGACGACCAGCAGGCACAGCGTTTGGCACGCCGGCACAGCGGCAAGCGCCTGATCGCCGAACTGCTGCTCGATTGCGCTGCATGCCGGCGCAGTGTCGAGGCCGAACCAGCGGCAGAAGCTCGGGCCATCGAAGCGCTGCGCCAGGACATACGCCAACGAGAACAACGCTGCGTCGAAGCCTTg                                                                                                                 <  2:1044006/227‑1 (MQ=255)                         gAAACCGCCCGCCCGGCGCTGCAACGGCTGATCGACGACCAGCAGGCACAGCGTTTGGCACGCCGGCACAGCGGCAAGCGCCTGATCGCCGAACTGCTGCTCGATTGCGCTGCATGCCGGCGCAGTGTCGAGGCCGAACCAGCGGCAGAAGCTCGGGCCATCGAAGCGCTGCGCCAGGACATACGCCAACGAGAACAACGCTGCGTCGa                                                                                                                        <  1:726855/209‑1 (MQ=255)                             ccgcccgccCGGCGCTGCAACGGCTGATCGACGACCAGCAGGCACAGCGTTTGGCACGCCGGCACAGCGGCAAGCGCCTGATCGCCGAACTGCTGCTCGATTGCGCTGCATGCCGGCGCAGTGTCGAGGCCGAACCAGCGGCAGAAGCTCGGGCCATCGAAGCGCTGCGCCAGGACATACGCCAACGAGAACAACGCTGCGTCGa                                                                                                                        <  2:481095/204‑1 (MQ=255)                                           cTGCAACGGCGGATCGACGACCCGCAGGCACAGCGTTTGGCACGCCGGCACAGCGGCAAGCGCCTGATCGCCGAACTGCTGCTCGATTGCGCTGCATGCCGGCGCAGTGTCGAGGCCGAACCAGCGGCAGAAGCTCGGGCCATCGAAGCGCTGCGCCAGGACATACGCCAACGAGAACAACGCTGCGTCGaa                                                                                                                       <  1:524958/192‑1 (MQ=255)                                              cAACGGCTGATCGACGACCAGCAGGCACAGCGTTTGGCACGCCGGCACAGCGGCAAGCGCCTGATCGCCGAACTGCTGCTCGATTGCGCTGCATGCCGGCGCAGTGTCGAGGCCGAACCAGCGGCAGAAGCTCGGGCCATCGAAGCGCTGCGCCAGGACATACGCCAACGAGAACAACGCTGCGTCGAAGCCTTGCTCAAGCTGTATGCCTTCCGCcgcg                                                                                        <  1:767778/220‑1 (MQ=255)                                                        tCGACGACCAGCAGGCACAGCGTTTGGCACGCCGGCACAGCGGCAAGCGCCTGATCGCCGAACTGCTGCTCGATTGCGCTGCATGCCGGCGCAGTGTCGAGGCCGAACCAGCGGCAGAAGCTCGGGCCATCGAAGCGCTGCGCCAGGACATACGCCAACga                                                                                                                                         <  1:341236/161‑1 (MQ=255)                                                                         caGCGTTTGGCACGCCGGCACAGCGGCAAGCGCCTGATCGCCGAACTGCTGCTCGATTGCGCTGCATGCCGGCGCAGTGTCGAGGCCGAACCAGCGGCAGAAGCTCGGGCCATCGAAGCGCTGCGCCAGGACATACGCCAACGAGAACAACGCTGCGTCGAAGCCTTGCTCaa                                                                                                            <  2:1067611/173‑1 (MQ=255)                                                                               tcggCACGCCGGCACAGCGGCAAGCGCCGGATCGCCGAACTGCTGCTCGGTTGCGCTGCATGCCGGCGCAGTGTCGAGGCCGAACCAGCGGCAGAAGCTCGGGCCATCGAAGCGCTGCGCCAGGACATACGCCAACGAGaacaac                                                                                                                                  <  2:159861/143‑1 (MQ=255)                                                                                        cGGCACAGCGGCAAGCGCCTGATCGCCGAACTGCTGCTCGATTGCGCTGCATGCCGGCGCAGTGTCGAGGCCGAACCAGCGGCAGAAGCTCGGGCCATCGAAGCGCTGCGCCAGGACATACGCCAACGAGAACAACGCTGCGTCGAAGCCTTGCTCAAGCTGTATGCCTTCCGCCGCGAGGACGCCCATGCCAGCGAcc                                                                   <  1:369420/199‑1 (MQ=255)                                                                                               gCGGCAAGCGCCTGATCGCCGAACTGCTGCTCGATTGCGCTGCATGCCGGCGCAGTGTCGAGGCCGAACCAGCGGCAGAAGCTCGGGCCATCGAAGCGCTGCGCCAGGACATACGCCAACGAGAACAACGCTGCGTCGAAGCCTTGCTCAAGCTGTATGCCTTCCGCCGCGAGGACGCCCATGCCAGCGACCTGCCGTTGCTGGACGGCCGCTGGGGCGATGACTTGTTCAATcc                        <  1:497167/235‑1 (MQ=255)                                                                                                             aTCGCCGAACTGCTGCTCGATTGCGCTGCATGCCGGCGCAGTGTCGAGGCCGAACCAGCGGCAGAAGCTCGGGCGATCGAAGCGCTGCGCCAGGACATACGCCAACGAGAACAACGCTGCGTCGAAGCCTTGCTCAAGCTGTATGCCTTCCGCCGCGAGGACGCCCATGCCAGCGACCTGCCGTTGCTGGACGGCCGCTGGGGCGATGACTTGTTCAATCCGGAAACGTTGAAAct         <  1:949026/236‑1 (MQ=255)                                                                                                                    aaCTGCTGCTCGATTGCGCTGCATGCCGGCGCAGTGTCGAGGCCGAACCAGCGGCAGAAGCTCGGGCCATCGAAGCGCTGCGCCAGGACATACGCCAACGAGAACAACGCTGCGTCGAAGCCTTGCTCAAGCTGTATGCCTTCCGCCGCGAGGACGCCCATGCCAGCGACCTGCCGTTGCTGGACGGCCGCTGGGGCGATGACTTGTTCAATCCGGAAACGTTGAAACTGCTGGGc  <  1:843892/236‑1 (MQ=255)                                                                                                                          tgccCGATTGCGCTGCATGCCGGCGCAGTGTCGAGGCCGAACCAGCGGCAGAAGCTCGGGCCATCGAAGCGCTGCGCCAGGACATACGCCAACGAGAACAACGCTGCGTCGAAGCCTTGCTCAAGCTGTATGCCTTCCGCCGCGAGGACGCCCATGCCAGCGACCTGCCGTTGCTGGACGGCCGCTGGGGCGATGACTTGTTCAATcc                        <  1:274739/208‑1 (MQ=255)                                                                                                                                                     gtgtCGAGGCCGAACCAGCGGCAGAAGCTCGGGCCATCGAAGCGCTGCGCCAGGACATACGCCAACGAGAACAACGCTGCGTCGAAGCCTTGCTCAAGCTGTATGCCTTCCGCCGCGAGGACGCCCATGCCAGCGACCTGCCGTTGCTGGACGGCCGCTGGGGCGATGACTTGTTCAATCCGGAAACGtt               <  1:77078/190‑1 (MQ=255)                                                                                                                                                      tgtCGAGGCCGAACCAGCGGCAGAAGCTCGGGCCATCGAAGCGCTGCGCCAGGACATACGCCAACGAGAACAACGCTGCGTCGAAGCCTTGCTCAAGCTGTATGCCTTCCGCCGCGAGGACGCCCATGCCAGCGACCTGcc                                                               >  2:237517/1‑141 (MQ=255)                                                                                                                                                       gtCGAGGCCGAACCAGCGGCAGAAGCTCGGGCCATCGAAGCGCTGCGCCAGGACATACGCCAACGAGAACAACGCTGCGTCGAAGCCTTGCTCAAGCTGTATGCCTTCCGCCGCGAGGACGCCCATGCCAGCGACCTGCCGTTGCTGGACGGCCGCTgg                                            <  2:859736/159‑1 (MQ=255)                                                                                                                                                                                                                        |                                                                                                                                        TACGAAAGCCTGGCGCTGCTGCTGGAAAACGCCCGCCCGGCGCTGCAACGGCTGATCGACGACCAGCAGGCACAGCGTTTGGCACGCCGGCACAGCGGCAAGCGCCTGATCGCCGAACTGCTGCTCGATTGCGCTGCATGCCGGCGCAGTGTCGAGGCCGAACCAGCGGCAGAAGCTCGGGCCATCGAAGCGCTGCGCCAGGACATACGCCAACGAGAACAACGCTGCGTCGAAGCCTTGCTCAAGCTGTATGCCTTCCGCCGCGAGGACGCCCATGCCAGCGACCTGCCGTTGCTGGACGGCCGCTGGGGCGATGACTTGTTCAATCCGGAAACGTTGAAACTGCTGGGC  >  AE015451/5858034‑5858384

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑