Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	3286784	3287306	523	19 [17]	[17] 20	[PP_2889]–[xthA]	[PP_2889],[xthA]

GTGTGGGCCCAAGGTGTGCACCTTGGGCCCGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGT  >  AE015451/3287260‑3287520                                                |                                                                                                                                                                                                                      gtgtGGGCCCAAGGTGTGCACCTTGGGCCCGTCACGCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATa                                                                                                                                                                >  2:570052/1‑103 (MQ=255) gtgtGGGCCCAAGGTGTGCACCTTGGGCCCGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCCCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCCGGTCGATGCGCAGGc                                                                                            >  2:1002283/1‑171 (MQ=255)       gCCCAAGGTGTGCACCTTGGGCCCGTCACCCTAATCAGCTCAACTCCAGCCAGCTCGGCGCa                                                                                                                                                                                                   >  2:407785/1‑62 (MQ=255)       gCCCAAGGTGTGCACCTTGGGCCCGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTGATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAGCGGTCGGTCACGTCCgg                      >  1:613923/1‑235 (MQ=255)          cAAGGTGTGCACCTTGGGCCCGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTGTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCGGCCt                                                                                                                                               >  1:112078/1‑111 (MQ=255)           aaGGTGTGCACCTTGGGCCCGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCAGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACa                 >  1:595927/1‑236 (MQ=255)               tgtgCACCTTGGGCCCGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCACAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGGccg                                                                          >  2:552151/1‑174 (MQ=255)                    aacTTGAGCCCGTCACCCGAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCAGACGGCTTTTCCATCCCGCGCa                                                                                                                                                                       >  2:663154/3‑77 (MQ=255)                     ccTTGGGCCCGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATCGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATgcg                                                                                                 >  2:238276/1‑146 (MQ=255)                      cTTGGGCCCGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATgcgc                                                                                                                                       <  2:907646/107‑1 (MQ=255)                      cTTGGGCCCGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATgcgc                                                                                                                                       >  1:907647/1‑107 (MQ=255)                            cccGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCGTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTgc                                         >  1:254303/1‑194 (MQ=255)                              cGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGa                                                                                                                      >  2:185791/1‑116 (MQ=255)                              cGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGa                                                                                                                      <  1:185791/116‑1 (MQ=255)                                   cccTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCCTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGGCGAACCAGCTGAAACGGTCGGGCa                             >  2:35628/1‑200 (MQ=255)                                        aTCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCATTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAgctg                                                                                                                            >  2:705447/1‑100 (MQ=255)                                           aGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCgg         >  1:643244/1‑212 (MQ=255)                                                aaCTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCgcgc                                                                                                                                                                        >  2:323258/1‑48 (MQ=255)                                                aaCTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCgcgc                                                                                                                                                                        <  1:323259/48‑1 (MQ=255)                                                aaCTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGt  >  1:420673/1‑214 (MQ=255)                                                |                                                                                                                                                                                                                      GTGTGGGCCCAAGGTGTGCACCTTGGGCCCGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGT  >  AE015451/3287260‑3287520

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑