Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	5401198	5401588	391	19 [18]	[16] 20	PP_4743/PP_4745	conserved protein of unknown function/transposase

CAAGCACCTCAACCATCAACGCAATATTAGCCCCCCGACCGCCCCCAAACGCCAGCAACGTCCCATGCAATGCCTCTCGCGCGCTGCGCGTTTCATTCCCTTGTGCATCAACCGCCCAGCCTGCCGGTATCGCCTCTCCCGCTTCAGCGGCCCGCAGCAGGTTCACGTAAGCCGTGGCGCTGCTAGCTTGGTCAATCGCCAGTAACCGCCCCGTGTCACTGGCGGCGGCAAATGCAATGGGGTTGGTGGAGTACAGCGGTCGGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTC  >  AE015451/5401485‑5401819                                                                                                         |                                                                                                                                                                                                                                       cAAGCACCTCAACCATCAACGCAATATTAGCCCCCCGACCGCCCCCAAACGCCAGCAACGTCCCATGCAATGCCTCTCGCGCGCTGCGCGTTTCATTCCCTTGTGCATCAACCGCCCAGCCTGCCGGTATCGCCTCTCCCGCTTCAGCGGCCCGCAGCAGGTTCACGTAAGCCGTGGCGCTGCTAGCTTGGTCAATCGCCAGTAACCGCCCCGTGTCACTGGCGGCGGCaa                                                                                                          >  1:378712/1‑231 (MQ=255)      aCCTCAACCATCAACGCAATATTAGCCCCCCGACCGCCCCCAAACGCCAGCAAAGTCCCATGCAATGCCTCTCGCGCGCTGCGCGTTTCATTCCCTTGTGCATCAACCGCCCAGCCTGCCGGTATCGCCTCTCCCGCTTCAGCGGCCCGCAGCAGGTTCACGTAAGCCGTGGCGCTGCTAGCTTGGTCAATCGCCAGTAACCGCCCCGTGTCACTGGCGGCGGCAAATGCAATggg                                                                                                >  1:619142/1‑236 (MQ=255)                                      aCCGCCCCCAAACGCCAGCAACGTCCCATGCAATGCCTCTCGCGCGCTGCGCGTTTCATTCCCTTGTGCATCAACCGCCCAGCCTGCCGGTATCGCCTCTCCCGCTTCAGCGGCCCGCAGCAGGTTCACGTAAGc                                                                                                                                                                     >  1:248101/1‑135 (MQ=255)                                         gCCCCCAAACGCCAGCCACGTCCCACGCAATGCCTCTCGCGCGCTGCGCGTTTCATTCCCTTGTGCATCAACCGCCCAGCCTGCCGGTATCGCCTCTCCCGCTTCAGCGGCCCGCAGCAGGTTCACGTAAGCCGTGGCGCTGCTAGCTTGGTCAATc                                                                                                                                            <  1:833577/157‑1 (MQ=255)                                             ccAAACGCCAGCAACGTCCCATGCAATGCCTCTCGCGCGCTGCGCGTTTCATTCCCTTGTGCATCAACCGCCCAGCCTGCCGGTATCGCCTCTCCCGCTTCAGCGGCCCGCAGCAGGTTCACGTAAGCCGTGGCGCTGCTAGCTTGGTCAATCGCCAGTAACCGCCCCGTGTCACTGGCGGCGGCAAATGCAATGGGGTTGGTGGAGTACAGCGGTCGGTAACCGATcc                                                                >  1:424095/1‑229 (MQ=255)                                                        cAACGTCCCATGCAATGCCTCTCGCGCGCTGCGCGTTTCATTCCCTTGTGCATCAACCGCCCAGCCTGCCGGTATCGCCTCTCCCGCTTCAGCGGCCCGCAGCAGGTTCACGTAAGCCGTGGCGCTGCTAGCTTGGTCAATCGCCAGTAACCGCCCCGTGTCACTGGCGGCGGCAAATGCAATgg                                                                                                 >  2:734210/1‑185 (MQ=255)                                                        cAACGTCCCATGCAATGCCTCTCGCGCGCTGCGCGTTTCATTCCCTTGTGCATCAACCGCCCAGCCTGCCGGTATCGCCTCTCCCGCTTCAGCGGCCCGCAGCAGGTTCACGTAAGCCGTGGCGCTGCTAGCTTGGTCAATCGCCAGTAACCGCCCCGTGTCACTGGCGGCGGCAAATGCAATgg                                                                                                 <  1:734211/185‑1 (MQ=255)                                                          aCGTCCCATGCAATGCCTCTCGCGCGCTGCGCGTTTCATTCCCTTGTGCATCAACCGCCCAGCCTGCCGGTATCGCCTCTCCCGCTTCAGCGGCCCGCAGCAGGTTCACGTAAGCCGTGGCGCTGCTAGCTTGGTCAATCGCCAGTAACCGCCCCGTGTCACTGGCGGCGGCAAATGCAAt                                                                                                   >  1:504314/1‑181 (MQ=255)                                                          aCGTCCCATGCAATGCCTCTCGCGCGCTGCGCGTTTCATTCCCTTGTGCATCAACCGCCCAGCCTGCCGGTATCGCCTCTCCCGCTTCAGCGGCCCGCAGCAGGTTCACGTAAGCCGTGGCGCTGCTAGCTTGGTCAATCGCCAGTAACCGCCCCGTGTCACTGGCGGCGGCAAATGCAATGGGGTTGGTGGAGTACAGCGGTCGGTAACCGATCCATGAACCCCACCTACCACaa                                            >  1:188077/1‑236 (MQ=255)                                                                cATGCAATGCCTCTCGCGCGCGGCGCGTTTCATTCCCTTGTGCATCAACCGCCCAGCCTGCCGGTATCGCCTCTCCCGCTTCAGCGGCCCGCAGCAGGTTCACGTAAGCCGTGGCGCTGCTAGCTTGGTCAATCGCCAGTAACCGCCCCGTGTCACTggcggcgg                                                                                                             >  2:1074262/1‑165 (MQ=255)                                                                     aaTGCCTCTCGCGCGCTGCGCGTTTCATTCCCTTGTGCATCAACCGCCCAGCCTGCCGGTATCGCCTCTCCCGCTTCAGCGGCCCgcagc                                                                                                                                                                                   >  2:356606/1‑90 (MQ=255)                                                                          ctctCGCGCGCTGCGCGTTTCATTCCCTTGTGCATCAACCGCCCAGCCTGCCGGTATCGCCTCTCCCGCTTCAGCGGCCCGCAGCAGGTTCACGTAAGCCGTGGCGCTGCTAGCTTGGTCAATCGCCAGTAACCGCCCCGTGTCACTGGCGGCGGCAAATGCAATGGGGTTGGTGGAGTACAGCGGTCGGTAACCg                                                                    >  1:35251/1‑196 (MQ=255)                                                                          ctctCGCGCGCTGCGCGTTTCATTCCCTTGTGCATCAACCGCCCAGCCTGCCGGTATCGCCTCTCCCGCTTCAGCGGCCCGCAGCAGGTTCACGTAAGCCGTGGCGCTGCTAGCTTGGTCAATCGCCAGTAACCGCCCCGTGTCACTGGCGGCGGCAAATGCAATGGGGTTGGTGGAGTACAGCGGTCGGTAACCGATCCATGAACCCCACCTACCACAAGGTgg                                       >  1:733156/1‑225 (MQ=255)                                                                                       cgcgTTTCATTCCCTTGTGCATCAACCGCCCAGCCTGCCGGTATCGCCTCTCCCGCTTCAGCGGCCCGCAGCAGGTTCACGTAATCCGTGGCGCTGCTAGCTTGGTCCATCGCCAGTAACCGCCCCGTGTCACTGGCGGCGGCAAATGCAATGGGGTTGGTGGAGTCCCGCGGTCGGTAACCGATCCATGAACCCCAc                                                     >  2:97958/1‑198 (MQ=255)                                                                                          gTTTCATTCCCTTGTGCATCAACCGCCCAGCCTGCCGGTATCGCCTCTCCCGCTTCAGCGGCCCGCAGCAGGTTCACGTAAGCCGTGGCGCTGCTAGCTTGGTCAATCGCCAGTAACCGCCCCGTGTCACTGGCGGCGGCAAATGCAATGGGGTTGGTGGAGTACAGCGGTCGGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTgg            >  1:527081/1‑236 (MQ=255)                                                                                                    cTTGTGCATCAACCGCCCAGCCTGCCGGTATCGCCTCTCCCGCTTCAGCGGCCCGCAGCAGGTTCACGTAAGCCGTGGCGCTGCTAGCTTGGTCAATCGCCAGTAACCGCCCCGTGTCACTGGCGGCGGCAAATGCAATGGGGTTGGTGGAGTACAGCGGTCGGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCGCTGGCGAACAGGTc  >  1:245644/1‑236 (MQ=255)                                                                                                         gCATCAACCGCCCAGCCTGCCGGTATCGCCTCTCCCGCTTCAGCGGCCCGCAGCAGGTTCACGTAAGCCGTGGCGCTGCTAGCTTGGTCAATCGCCAGTAACCGCCCCGTGTCACTggcggc                                                                                                               >  2:811484/1‑122 (MQ=255)                                                                                                         gCATCAACCGCCCAGCCTGCCGGTATCGCCTCTCCCGCTTCAGCGGCCCGCAGCAGGTTCACGTAAGCCGTGGCGCTGCTAGCTTGGTCAATCGCCAGTAACCGCCCCGTGTCACTGGCGGCGGCAAATGCAATGGGGTTGGTGGAGTa                                                                                    >  1:667394/1‑149 (MQ=255)                                                                                                         gCATCAACCGCCCAGCCTGCCGGTATCGCCTCTCCCGCTTCAGCGGCCCGCAGCAGGTTCACGTAAGCCGTGGCGCTGCTAGCTTGGTCAATCGCCAGTAACCGCCCCGTGTCACTGGCGGCGGCAAATGCAATGGGGTTGGTGGAGTa                                                                                    <  2:667393/149‑1 (MQ=255)                                                                                                         gCATCAACCGCCCAGCCTGCCGGTATCGCCTCTCCCGCTTCAGCGGCCCGCAGCAGGTTCACGTAAGCCGTGGCGCTGCTAGCTTGGTCAATCGCCAGTAACCGCCCCGTGTCACTGGCGGCGGCAAATGCAATGGGGTTGGTGGAGTACAGCGGTCGGTAACCGATCCATGAACCCCACCTACCCCAAGGTGGAAGCCAAAGTTACCGTGGCATctct              >  2:433192/1‑219 (MQ=255)                                                                                                         |                                                                                                                                                                                                                                       CAAGCACCTCAACCATCAACGCAATATTAGCCCCCCGACCGCCCCCAAACGCCAGCAACGTCCCATGCAATGCCTCTCGCGCGCTGCGCGTTTCATTCCCTTGTGCATCAACCGCCCAGCCTGCCGGTATCGCCTCTCCCGCTTCAGCGGCCCGCAGCAGGTTCACGTAAGCCGTGGCGCTGCTAGCTTGGTCAATCGCCAGTAACCGCCCCGTGTCACTGGCGGCGGCAAATGCAATGGGGTTGGTGGAGTACAGCGGTCGGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTC  >  AE015451/5401485‑5401819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑