Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	5816897	5817312	416	22 [18]	[15] 20	[pilT]	[pilT]

CGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTCTTCCAGGGTAATGATGTGCAGCGCCCGCTCGCGGTTCAGCTGGTCGAGCAGCGTTGCCAGGGTGCTGGACTTGCCACTGCCGGT  >  AE015451/5817149‑5817548                                                                                                                                                                     |                                                                                                                                                                                                                                            cgACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTg                                                                                                                                                                       >  1:714648/1‑235 (MQ=255)                        gCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGccc                                                                                                                                               >  1:906913/1‑236 (MQ=255)                          cAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGc                                                                                                                                                                            <  2:497081/205‑1 (MQ=255)                                        ccAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTg                                                                                                                               <  1:116848/236‑1 (MQ=255)                                          aaCGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGAc                                                                                                                             >  1:1047477/1‑236 (MQ=255)                                                     cTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCgct                                                                                                                  >  1:198354/1‑236 (MQ=255)                                                           agcaAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGc                                                                                                                                                                                                                        >  2:189742/1‑128 (MQ=255)                                                                acacCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCa                                                                                                          >  1:544551/1‑233 (MQ=255)                                                                               tGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCAtctc                                                                                                                                         >  1:522180/1‑187 (MQ=255)                                                                                   gATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTc                                                                                                           >  2:205209/1‑213 (MQ=255)                                                                                    aTGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTc                                                                                      >  2:654982/1‑233 (MQ=255)                                                                                                                                  gCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTc                                                                                      >  2:59350/1‑187 (MQ=255)                                                                                                                                  gCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTCTTCCAGGGTAATGATGTGCAGCGCCCGCTCGCGGTTCAGCTGGTCGag                                      >  1:529789/1‑235 (MQ=255)                                                                                                                                                    gcAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTCTTCCAGGGTAATGATGTGCAGCGCCCGCTCGCGGTTCAGCTGGTCGAGCAGCGTTGc                             <  1:205209/226‑1 (MQ=255)                                                                                                                                                                gAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGCTCTCGACAGGGTCTTCCAGGGTAATGATGTGCAGCGCCCGCGCGCGGTTCAGCTGGTCGAGCTGCGtt                               >  2:546705/1‑212 (MQ=255)                                                                                                                                                                     gTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCgc                                                                                             >  2:333129/1‑144 (MQ=255)                                                                                                                                                                     gTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTCTTCCAGGGTAATGATGTGCAGCGCCCGCTCGCGGTTCAGCTGGTCGAGCAGCGTTGCCAGGGTGCTGGACTTGCCACTGCCgg   >  1:464880/1‑235 (MQ=255)                                                                                                                                                                     gTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTCTTCCAGGGTAATGATGTGCAGCGCCCGCTCGCGGTTCAGCTGGTCGAGCAGCGTTGCCAGGGTGCTGGACTTGCCACTGCCg    >  2:640777/1‑234 (MQ=255)                                                                                                                                                                     gTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTCTTCCAGGGTAATGATGTGCAGCGCCCGCTCGCGGTTCAGCTGGTCGAGCAGCGTTGCCAGGGTGCTGGACTTGCCACTGCCGGt  >  2:577494/1‑236 (MQ=255)                                                                                                                                                                     gTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTCTTCCAGGGTAATGATGTGCAGCGCCCGCCcgcg                                                     >  2:110110/1‑185 (MQ=255)                                                                                                                                                                     |                                                                                                                                                                                                                                            CGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTGGTTGACCAGGCTGCGCTGGCTGTCATGGATGATCTCGACAGGGTCTTCCAGGGTAATGATGTGCAGCGCCCGCTCGCGGTTCAGCTGGTCGAGCAGCGTTGCCAGGGTGCTGGACTTGCCACTGCCGGT  >  AE015451/5817149‑5817548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑