New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 222190	49 (0.690)	5 (0.070)	5/328	NT	8.6%	coding (45/1020 nt)	PP_0170	ABC transporter, periplasmic binding protein
	?	AE015451	= 222229	60 (0.900)					coding (84/1020 nt)	PP_0170	ABC transporter, periplasmic binding protein

TGCTGCAGCAGCTGTATGCCCTTAGCGTGCTGGAGCAGAACATTTATCGCCACCAGTGGCAGCCCTATGACCTGGTGTTCTGGGACAACCGTTCGCTGATCCACTTGGCCACCGGCTGCCCCGCGCACCTGCGGCGCAAGCTGTACCGCACCACCATCCAGGGCGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/221950‑222190 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcctgggcCACGGCGGGGGCGGCTAGGCTGCCGACGACCAGGCTTGCGCCCAGGCCGATGCTTGCCGCCAGGCGGCTGATGGATTTGCGCATGATGGTTTCCTCAGTCGTCAGAACGGGGCATCGCCCTGGATGGTGGTGCGGTACAGCTTGCGCCGCAGGTGCGCGGGGCAGCCGGTGGCCAAGTGGATCAGCGAACGGTTGTCCCAGAACACCAGGTCATAGGGCTGCCACTGGTGGCGAT  <  AE015451/222229‑221995                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGCTGCAGCAGCTGTATGCCCTTAGCGTGCTGGAGCAGAACATTTATCGCCACCAGTGGCAGCCCTATGACCTGGTGTTCTGGGACAACCGTTCGCTGATCCACTTGGCCACCGGCTGCCCCGCGCACCTGCGGCGCAAGCTGTACCGCACCACCATCCAGGGCGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCG                                                                                                                                                                                                                                                     >  1:772274/1‑233       AGCAGCTGTATGCCCTTAGCGTGCTGGAGCAGAACATTTATCGCCACCAGTGGCAGCCCTATGACCTGGTGTTCTGGGACAACCGTTCGCTGATCCACTTGGCCACCGGCTGCCCCGCGCACCTGCGGCGCAAGCTGTACCGCACCACCATCCAGGGCGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGG                                                                                                                                                                                                                                               <  2:494592/233‑1          AGCTGTATGCCCTTAGCGTGCTGGAGCAGAACATTTATCGCCACCAGTGGCAGCCCTATGACCTGGTGTTCTGGGACAACCGTTCGCTGATCCACTTGGCCACCGGCTGCCCCGCGCACCTGCGGCGCAAGCTGTACCGCACCACCATCCAGGGCGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGatggtg                                                                                                                                                                                                                                         <  1:385133/236‑7                                                 GCCACCAGTGGCAGCCCTATGACCTGGTGTTCTGGGACAACCGTTCGCTGATCCACTTGGCCACCGGCTGCCCCGCGCACCTGCGGCGCAAGCTGTACCGCACCACCATCCAGGGCGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATC                                                                                                                                                                                                                                                      <  1:437393/184‑1                                                    ACCAGTGGCAGCCCTATGACCTGGTGTTCTGGGACAACCGTTCGCTGATCCACTTGGCCACCGGCTGCCCCGCGCACCTGCGGCGCAAGCTGTACCGCACCACCATCCAGGGCGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCT                                                                                                                                                                                                                                                 >  2:528673/1‑186                                                       AGTGGCAGCCCTATGACCTGGTGTTCTGGGACAACCGTTCGCTGATCCACTTGGCCACCGGCTGCCCCGCGCACCTGCGGCGCAAGCTGTACCGCACCACCATCCAGGGCGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCCACGGCGGGGGCGGCTAGGCTGCCGACGACCAGGCTTGCGCCCAGGCCG                                                                                                                                                                                            <  1:218057/236‑1                                                                       CCTGGTGTTCTGGGACAACCGTTCGCTGATCCACTTGGCCACCGGCTGCCCCGCGCACCTGCGGCGCAAGCTGTACCGCACCACCATCCAGGGCGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCT                                                                                                                                                                                                                                                 >  2:740107/1‑167                                                                                                           GGCCACCGGCTGCCCCGCGCACCTGCGGCGCAAGCTGTACCGCACCACCATCCAGGGCGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCC                                                                                                                                                                                                                                                  >  2:532757/1‑130                                                                                                                                CCTGCGGCGCAAGCTGGACCGCACCACCAGCCAGGGCGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCG                                                                                                                                                                                                                                                     <  2:86288/106‑1                                                                                                                                                         ACCATCCAGGGCGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCCACGGCGGGGGCGGCTA                                                                                                                                                                                                                            >  1:312131/1‑106                                                                                                                                                                  GGCGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCCACGGCGGGGGCGGCTAGGCTGCCGACGACCAGGCTTGCGCCCAGGCCGATGCTTGCCGC                                                                                                                                                                                 >  2:1149418/1‑140                                                                                                                                                                          CCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCCACGGCGGGGGCcg                                                                                                                                                                                                                               >  2:96940/1‑84                                                                                                                                                                                      ACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCCACGGCGGGGGCGGCTAGGCTGCCGACGACCAGGCTTGCGCCCAGGCCGATGCTTGCCGCC                                                                                                                                                                                >  2:772269/1‑121                                                                                                                                                                                                         GCAAATCCATCAGCCGCCTGGCGGCAAGCATCGG                                                                                                                                                                                                                                                    >  2:290338/1‑34                                                                                                                                                                                                                                       TCGGCCTGGGCCACGGCGGGGGCGGCTAGGCTGCCGACGACCAGGCTTGCGCCCAGGCCGATGCTTGCCGCCAGGCGGCTGATGGATTTGCGCATGATGGTTTCCTCAGTCGTCAGAACGGGGCATCGCCCTGGATGGTGGTGCGGTACAGCTTGCGCCGCAGGTGCGCGGGGCAGCCGGTGGCCAAGTGGATCAG                                                    <  1:752486/196‑1                                                                                                                                                                                                                                           CCTGGGCCACGGCGGGGGCGGCTAGGCTGCCGACGACCAGGCTTGCGCCCAGGCCGATGCTTGCCGCCAGGCGGCTGATGGATTTGCGCATGATGGTTTCCTCAGTCGTCAGAACGGGGCATCGCCCTGGATGGTGGTGCGGTACAGCTTGCGCCGCAGGTGCGCGGGGCAGCCGGTGGCCAAGTGGATCAGCGAACGGTTGTCCCAGAA                                  <  2:1256366/210‑1                                                                                                                                                                                                                                             TGGGCCACGGCGGGGGCGGCTAGGCTGCCGACGACCAGGCTTGCGCCCAGGCCGATGCTTGCCGCCAGGCGGCTGATGGATTTGCGCATGATGGTTTCCTCAGTCGTCAGAACGGGGCATCGCCCTGGATGGTGGTGCGGTACAGCTTGCGCCGCAGGTGCGCGGGGCAGCCGGTGGCCAAGTGGATCAG                                                    <  2:213648/190‑1                                                                                                                                                                                                                                                 CCACGGCGGGGGCGGCTAGGCTGCCGACGACCAGGCTTGCGCCCAGGCCGATGCTTGCCGCCAGGCGGCTGATGGATTTGCGCATGATGGTTTCCTCAGTCGTCAGAACGGGGCATCGCCCTGGATGGTGGTGCGGTACAGCTTGCGCCGCAGGTGCGCGGGGCAGCCGGTGGCCAAGTGGATCAGCGAACGGTTGTCCCAGAACACCAGGTCATAGGGCTGCCACTGGTGGCGAT  <  1:776456/236‑1                                                                                                                                                                                                                                                 CCACGGCGGGGGCGGCTAGGCTGCCGACGACCAGGCTTGCCCCCAGGCC                                                                                                                                                                                             >  2:16490/1‑49                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGCTGCAGCAGCTGTATGCCCTTAGCGTGCTGGAGCAGAACATTTATCGCCACCAGTGGCAGCCCTATGACCTGGTGTTCTGGGACAACCGTTCGCTGATCCACTTGGCCACCGGCTGCCCCGCGCACCTGCGGCGCAAGCTGTACCGCACCACCATCCAGGGCGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/221950‑222190 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcctgggcCACGGCGGGGGCGGCTAGGCTGCCGACGACCAGGCTTGCGCCCAGGCCGATGCTTGCCGCCAGGCGGCTGATGGATTTGCGCATGATGGTTTCCTCAGTCGTCAGAACGGGGCATCGCCCTGGATGGTGGTGCGGTACAGCTTGCGCCGCAGGTGCGCGGGGCAGCCGGTGGCCAAGTGGATCAGCGAACGGTTGTCCCAGAACACCAGGTCATAGGGCTGCCACTGGTGGCGAT  <  AE015451/222229‑221995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.