New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	449163 =	50 (0.700)	3 (0.040)	3/330	NT	6.0%	coding (334/1779 nt)	PP_0370	Acyl‑CoA dehydrogenase family protein
	?	AE015451	449358 =	47 (0.700)					coding (529/1779 nt)	PP_0370	Acyl‑CoA dehydrogenase family protein

AGCTGCCATCAGCCTGGGGCTCGGCCTTGGTGCGGATGATGCCCAGGTCGGTGCCGGCATGCGGCTCGGTCAGGCACATGGAGCCGGCCCAAACGCCGGCATACATGTTCGGAAGGTATTTTTCCTTCAAGGCCTCGCTGGCGTGGGCGTTGATCGACAGGCAGGCGCCGGCCGTCAGCATCGGGTACAGGCCGAAGGCCAGGCTGGACGCGTTGACCATTTCCTCGACCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/449397‑449163 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacctgggcATCATCCGCACCAAGGCCGAGCCCCAGGCTGATGGCAGCTACAAGGTCAGCGGTACCAAGATTTTCATCACGGGTGGCGAACACGACCTGACCGAGAACATCATCCATCTGGTGCTGGCCAAGTTGCCGGATGCACCGGCGGGGCCGAAAGGGATTTCGCTGTTCCTGGTGCCGAAGTTCCTGGTCAATGAAGACGGCAGCCTCGGTGCGCGGAACCCGGCCACTTGCGG  >  AE015451/449358‑449587                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AGCTGCCATCAGCCTGGGGCTCGGCCTTGGTGCGGATGATGCCCAGGTCGGTGCCGGCATGCGGCTCGGTCAGGCACATGGAGCCGGCCCAAACGCCGGCATACATGTTCGGAAGGTATTTTTCCTTCAAGGCCTCGCTGGCGTGGGCGTTGATCGACAGGCAGGCGCCGGCCGTCAGCATCGGGTACAGGCCGAAGGCCAGGCTGGACGCGTTGACCATTTCCTCGA                                                                                                                                                                                                                                               <  1:623283/228‑1                                   GATGAAGCCCAGGTGGGTGCCGGCATGCGGCTCGGTCAGGCACATGGAGCCGGCCCAAACGCCGGCATACATGTTCGGAAGGTATTTTTCCTTCAAGGCCTCGCTGGCGTGGGCGTTGATCGACAGGCAGGCGCCGGCCGTCAGCATCGGGTACAGGCCGAAGGCCAGGCTGGACGCGTTGACCATTTCCTC                                                                                                                                                                                                                                                 <  1:361189/192‑1                                                                                              CGCCGGCATACATGTTCGGAAGGTATTTTTCCTTCAAGGCCTCGCTGGCGTGGGCGTTGATCGACAGGCAGGCGCCGGCCGTCAGCATCGGGTACAGGCCGAAGGCCAGGCTGGACGCGTTGACCATTTCCTCG                                                                                                                                                                                                                                                <  2:674097/134‑1                                                                                                                                                                                        GGTACAGGCCGAAGGCCAGGCTGGACGCGTTGACCATTTCCTCGACCTGGGCATCATCCGCACCAAGGCCGAGCCCCAGGCTGATGGCAGCTACAAGGTCAGCGGTACCAAGATTTTCATCACGGGTGGCGAACACGACCTGACCGAGAACAGCATCCATCTGGTGCTGGCCAAGTTGCCGGAT                                                                                                    >  2:1162920/1‑184                                                                                                                                                                                                     GGCCAGGCTGGACGCGTTGACCATTTCCTCGACCTGGGCATCATCCGCACCAAGGCCGAGCCCCAGGCTGATGGCAGCTACAAGGT                                                                                                                                                                                         <  1:999536/86‑1                                                                                                                                                                                                     GGCCAGGCTGGACGCGTTGACCATTTCCTCGACCTGGGCATCATCCGCACCAAGGCCGAGCCCCAGGCTGATGGCAGCTACAAGGT                                                                                                                                                                                         >  2:999531/1‑86                                                                                                                                                                                                                                      CTGGGCATCATCCGCACCAAGGCCGAGCCCCAGGCTGATGGCAGCTACAAGGTCAGCGGTACCAAGATTTTCATCACGGGTGGCGAACACGACCTGACCGAGAACATCATCCATCTGGTGCTGGCCAAGTTGCCGGATGCACCGGCGGGGCCGAAAGGGATTTCGCTGTTCCTGGTGCCGAAGTTCCTGGTCAATGAAGACGGCAGCCTCGGTGCGCGGAACCCGGCCACTTGCGG  >  1:855216/1‑236                                                                                                                                                                                                                                       TGGGCATCATCCGCACCAAGGCCGAGCCCCAGGCTGATGGCAGCTACAAGGTCAGCGGTACCAAGATTTTCATCACGGGTGGCGAACACGACCTGACCGAGAACATCATCCATCTGGTGCTGGCCAAGTTGCCGGATGCACCGGCGGGGCCGCAAGGGATTTCGCTGTTCCTGGTGCCGcc                                                        >  2:30746/1‑179                                                                                                                                                                                                                                       TGGGCATCATCCGCACCAAGGCCGAGCCCCAGGCTGATGGCAGCTACAAGGTCAGCGGTACCAAGATTTTCATCACGGGTGGCGAACACGACCTGACCGAGAACATCATCCATCTGGTGCTGGCCAAGTTGCCGGATGCACCGGCGGGGCCGAAAGGGATTTCGCTGTTCCTGGTGCCGAAGTTCCTGGTCAATGAAGACGGCAGCCTCGGTGCGCGGAACCCGGCCACTTGCGG  >  1:745772/1‑235                                                                                                                                                                                                                                       TGGGCATCATCCGCACCAAGGCCGAGCCCCAGGCTGATGGCAGCTACAAGGTCAGCGGTACCAAGATTTTCATCACGGGTGGCGAACACGACCTGACCGAGAACATCATCCATCTGGTGCTGGCCAAGTTGCCGGATGCACCGGCGGGGCCGAAAGGGATTTCGCTGTTCCTGGTGCCGAAGTTCCTGGTCAATGAAGACGGCAGCCTCGGTGCGCGGAACCCGGC           >  1:1063101/1‑226                                                                                                                                                                                                                                       TGGGCATCATCCGCACCAAGGCCGAGCCCCAGGCTGATGGCAGCTACAAGGTCAGCGGTACCAAGATTTTCATCACGGGTGGCGAACACGACCTGACCGAGAACATCATCCATCTGGTGCTGGCCAAGTTGCCGGATGCACCGGCGGGGCC                                                                                      >  1:265521/1‑151                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AGCTGCCATCAGCCTGGGGCTCGGCCTTGGTGCGGATGATGCCCAGGTCGGTGCCGGCATGCGGCTCGGTCAGGCACATGGAGCCGGCCCAAACGCCGGCATACATGTTCGGAAGGTATTTTTCCTTCAAGGCCTCGCTGGCGTGGGCGTTGATCGACAGGCAGGCGCCGGCCGTCAGCATCGGGTACAGGCCGAAGGCCAGGCTGGACGCGTTGACCATTTCCTCGACCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/449397‑449163 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacctgggcATCATCCGCACCAAGGCCGAGCCCCAGGCTGATGGCAGCTACAAGGTCAGCGGTACCAAGATTTTCATCACGGGTGGCGAACACGACCTGACCGAGAACATCATCCATCTGGTGCTGGCCAAGTTGCCGGATGCACCGGCGGGGCCGAAAGGGATTTCGCTGTTCCTGGTGCCGAAGTTCCTGGTCAATGAAGACGGCAGCCTCGGTGCGCGGAACCCGGCCACTTGCGG  >  AE015451/449358‑449587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.