New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1031127	104 (1.460)	6 (0.090)	6/332	NT	5.7%	coding (1185/1353 nt)	PP_0887	Sensor histidine kinase
	?	AE015451	= 1031160	99 (1.460)					coding (1218/1353 nt)	PP_0887	Sensor histidine kinase

CTCAACCGCTGGCACCTGATGCGCCCGGAAGCCAGCTACCGCTTCCAGCGCCTGCGCGACGGCAAGGTGCCGCGTCTGGCGCCGCCGCCAGACCTGACCCAGGCGTTACTGAATCTGCTGAACAATGCCGCCGATGCCTGCCCTGATGATCTGGAAGTTCGCCTGGACTGGGACGCCCAGGACATCGTCATCAGTATCCACGACCATGGTCCTGGTGTACCGCCAGCCATTGCCGAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1030888‑1031127 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgaagccTTTGCCCTTGGTGGTAATAAAAGGTTTGCCAATGGCTTCGGCAATGGCTGGCGGTACACCAGGACCATGGTCGTGGATACTGATGACGATGTCCTGGGCGTCCCAGTCCAGGCGAACTTCCAGATCATCAGGGCAGGCATCGGCGGCATTGTTCAGCAGATTCAGTAACGCCTGGGTCAGGTCTGGCGGCGGCGCCAGACGCGGCACCTTGCCGTCGCGCAGGCGCTGGA  <  AE015451/1031160‑1030931                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CTCAACCGCTGGCACCTGATGCGCCCGGAAGCCAGCTACCGCTTCCAGCGCCTGCGCGACGGCAAGGTGCCGCGTCTGGCGCCGCCGCCAGACCTGACCCAGGCGTTACTGAATCTGCTGAACAATGCCGCCGATGCCTGCCCTGATGATCTGGAAGTTCGCCTGGACTGGGACGCCCAGGACATCGTCATCAGTATCCACGACCATGGTCCTGGTGTACCGCCAGCCATTGCCGA                                                                                                                                                                                                                                            >  1:1095418/1‑236                                                                                                                                                                   CTGGACTGGGACGCCCAGGACATCGTCATCAGTATCCACGACCATGGTCCTGGTGTACCGCCAGCCATTGCCGAAGCCTTTGCCCTTGGTGGTAATAAAAGGTTTGCCAATGGCTTCGGCAATGGCTGGCGGTACACCAGGACCATGGTCGTGGATACTGATGACGGTGTCCTGGGCGTCC                                                                                                                                 >  1:783179/1‑181                                                                                                                                                                                    GGACATCGTCATCAGTATCCACGACCATGGTCCTGGTGTACCGCCAGCCATTGCCGAAGCCTTTGCCCTTGGTGGTCATAAAAGGTTTGCCAATGGCTTCGGCAATGGCTGGCGGTACACCAGGACCATGGTCGTG                                                                                                                                                             >  2:684690/1‑136                                                                                                                                                                                                      CCACGACCATGGTCCTGGTGTACCGCCAGCCATTGCCGAAGCCTTTGCCCTTGGTGGTAATAAAAGGTTTGCCAATGGCTTCGGCAATGGCTGGCGGTACACCAGGACCATGGTCGTGGATACTGATGACGATGTCCTGGGCGTCC                                                                                                                                 >  1:1096984/1‑146                                                                                                                                                                                                                  TCCTGGTGTACCGCCAGCCATTGCCGAAGCCTTTGCCCTTGGTGGTAATAAAAGGTTTGCCAATGGCTTCGGCAATGGCTGGCGGTACACCAGGACCATGGTCGTGGATACTGATGACGATGTCCTGGGCGTCCCAGTCCAGGCGAACTTCCAGATCATCAGGGCAGGCATCGGCGGCATTGTTCAGC                                                                           >  1:125028/1‑188                                                                                                                                                                                                                              GCCAGCCATTGCCGAAGCCTTTGCCCTTGGTGGTAATAAAAGGTTTGCCAATGGCTTCGGCAATGGCTGGCGGTACACCAGGACCATGGTCGTGGATACTGATGACGATGTCCTGGGCGTCCCAGTCCAG                                                                                                                         >  1:365975/1‑130                                                                                                                                                                                                                              GCCAGCCATTGCCGAAGCCTTTGCCCTTGGTGGTAATAAAAGGTTTGCCAATGGCTTCGGCAATGGCTGGCGGTACACCAGGACCATGGTCGTGGATACTGATGACGATGTCCTGGGCGTCCCAGTCCAG                                                                                                                         <  2:365970/130‑1                                                                                                                                                                                                                                        GCCGAAGCCTTTGCCCTTGGTGGTAATAAAAGGTTTGCCAACGGCTTCGGCAATGGCTGGCGGTAC                                                                                                                                                                               <  1:627727/66‑1                                                                                                                                                                                                                                             AGCCTTTGCCCTTGGTGGTAATAAAAGGTTTGCCAATGGCTTCGGCAATGGCTGGCGGTACACCAGGACCATGGTCGTGGATACTGATGACGATGTCCTGGGCGTCCCAGTCCAGGCGAACTTCCAGATCATCAGGGCAGGCATCGGCGGCATTGTTCAGCAGATTCAGTAACGCCTGGGTCAGGTCTGGCGGCGGCGCCAGACGCGGCACCTTGCCGTCGCGCAGGCGCTGGA  <  2:615548/234‑1                                                                                                                                                                                                                                               CCTTTGCCCTTGGTGGTAATAAAAGGTTTGCCAATGGCTTCGGCAATGGCTGGCGGTACACCAGGACCATGGTCGTGGATACTGATGACGATGTCCTGGGCGTCCCAGTCCAGGCGAACTTCCAGATCATCAGGGCAGGCATCGGCGGCATTGCTCAGCAGATTCAGTAACGCCTGGGGCAGGTCGGGCGGCGGC                                       >  2:209076/1‑195                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CTCAACCGCTGGCACCTGATGCGCCCGGAAGCCAGCTACCGCTTCCAGCGCCTGCGCGACGGCAAGGTGCCGCGTCTGGCGCCGCCGCCAGACCTGACCCAGGCGTTACTGAATCTGCTGAACAATGCCGCCGATGCCTGCCCTGATGATCTGGAAGTTCGCCTGGACTGGGACGCCCAGGACATCGTCATCAGTATCCACGACCATGGTCCTGGTGTACCGCCAGCCATTGCCGAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1030888‑1031127 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgaagccTTTGCCCTTGGTGGTAATAAAAGGTTTGCCAATGGCTTCGGCAATGGCTGGCGGTACACCAGGACCATGGTCGTGGATACTGATGACGATGTCCTGGGCGTCCCAGTCCAGGCGAACTTCCAGATCATCAGGGCAGGCATCGGCGGCATTGTTCAGCAGATTCAGTAACGCCTGGGTCAGGTCTGGCGGCGGCGCCAGACGCGGCACCTTGCCGTCGCGCAGGCGCTGGA  <  AE015451/1031160‑1030931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.