New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2250804	76 (1.060)	7 (0.110)	7/314	NT	9.5%	coding (135/1434 nt)	leuC	3‑isopropylmalate dehydratase large subunit
	?	AE015451	= 2250786	65 (1.020)					coding (117/1434 nt)	leuC	3‑isopropylmalate dehydratase large subunit

AAAGCATAAAAATTATGAATTTGAGTTATTCAATCTAACCCCCTAGCATCGTCCGTACAAGCCAAGGGGTCTTTGGCATAGAAAGACGCTGATGAGGAACAGTCTGATGGCTGGCAAAACGCTCTACGACAAACTCTGGGAAGCCCATGAGGTCAAGCGCCGTGATGACGGCTCGTCCCTGATCTACATCGACCGCCACATCATCCACGAAGTGACGTCGCCCCAGGCCTTCGAAGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2250564‑2250804 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggccttcgaaggcctgGGGCGACGTCACTTCGTGGATGATGTGGCGGTCGATGTAGATCAGGGACGAGCCGTCATCACGGCGCTTGACCTCATGGGCTTCCCAGAGTTTGTCGTAGAGCGTTTTGCCAGCCATCAGACTGTTCCTCATCAGCGTCTTTCTATGCCAAAGACCCCTTGGCTTGTACGGACGATGCTAGGGGGTTAGATTGAATAACTCAAATTCATAATTTTTATGCTTTGGATA  <  AE015451/2250786‑2250559                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AAAGCATAAAAATTATGAATTTGAGTTATTCAATCTAACCCCCTAGCATCGTCCGTACAAGCCAAGGGGTCTTTGGCATAGAAAGACGCTGATGAGGAACAGACTGATGGCTGGCAAAACGCTCTACGACAAACTCTGGGAAGCCCATGAGGTCAAGCGCCGTGATGACGGCTCGTCCCTGATCTACATCGACCGCCACATCATCCACGAAGTTACGTCGCCCCAGGCCTTCGAc                                                                                                                                                                                                                                            >  2:889278/1‑234      ATAAAAATTATGAATTTGAGTTATTCAATCTAACCCCCTAGCATCGTCCGTACAAGCCAAGGGGTCTTTGGCATAGAAAGACGCTGATGAGGAACAGTCTGATGGCTGGCAAAACGCTCTACGACAAACTCTGGGAAGCCCATGAGGTCAAGCGCCGTGATGACGGCTCGTCCCTGATCTACATCGACCGCCACATCATCCACGAAGTGACGTCGCCCCAGGCCTTCGAAGGCC                                                                                                                                                                                                                                        >  1:273921/1‑234                                     AACCCCCTAGCATCGTCCGTACAAGCCAAGGGGTCTTTGGCATAGAAAGACGCTGATGAGGAACAGTCTGATGGCTGGCAAAACGCTCTACGACAAACTCTGGGAAGCCCATGAGGTCAAGCGCCGTGATGACGGCTCGTCCCTGATCTACATCGACCGCCACATCATCCACGAAGTGACGTCGCCCCAGGCCTTCGAA                                                                                                                                                                                                                                            >  2:946053/1‑199                                          CCTAGCATCGTCCGTACAAGCCAAGGGGTCTTTGGCATAGAAAGACGCTGATGAGGAACAGTCTGATGGCTGGCAAAACGCTCTACGACAAACTCTGGGAAGCCCATGAGGTCAAGCGCCGTGATGACGGCTCGTCCCTGATCTACATCGACCGCCACATCATCCACGAAGTGACGTCGCCCCAGGCCTTCGAAGGCCTGGGGCGACGTCACTTCGTGGATGATGTGGCGGTCG                                                                                                                                                                                                    <  2:683817/234‑1                                                       GTACAAGCCAAGGGGTCTTTGGCATAGAAAGACGCTGATGAGGAACAGTCTGATGGCTGGCAAAACGCTCTACGACAAACTCTGGGAAGCCCATGAGGTCAAGCGCCGTGATGACGGCTCGTCCCTGATCTACATCGACCGCCACATCATCCACGAAGTGACGTCGCCCCAGGCCTTCG                                                                                                                                                                                                                                              >  1:129736/1‑179                                                       GTACAAGCCAAGGGGTCTTTGGCATAGAAAGACGCTGATGAGGAACAGTCTGATGGCTGGCAAAACGCTCTACGACAAACTCTGGGAAGCCCATGAGGTCAAGCGCCGTGATGACGGCTCGTCCCTGATCTACATCGACCGCCACATCATCCACGAAGTGACGTCCCCCCAGGCC                                                                                                                                                                                                                                                  >  2:123689/1‑175                                                            AGCCAAGGGGTCTTTGGCATAGAAAGACGCTGATGAGGAACAGTCTGATGGCTGGCAAAACGCTCTACGACAAACTCTGGGAAGCCCATGAGGTCAAGCGCCGTGATGACGGCTCGTCCCTGATCTACATCGACCGCCACATCATCCACGAAGTGACGTCGCCCCAGGCCTTCGAAGGCCTGGGGCGACGTCACTTCGTGGATGATGTGGCGGTCGATGTA                                                                                                                                                                                               >  2:891829/1‑221                                                                     GTCTTTGGCATAGAAAGACGCTGATGAGGAACAGTCTGATGGCTGGCAAAACGCTCTACGACAAACTCTGGGAAGCCCATGAGGTCAAGCGCCGTGATGACGGCTCGTCCCTGATCTACATCGACCGCCACATCATCCACGAAGTGACGTCGCCCCCGGCCTgc                                                                                                                                                                                                                                               >  1:12228/1‑162                                                                                                                                     ACTCTGGGAAGCCCATGAGGTCAAGCGCCGTGATGACGGCTCGTCCCTGATCTACATCGACCGCCACATCATCCACGAAGTGACGTCGCCCCAGGCCTTCGAAGGCCTGGGGCGACGTCACTTCGTGGATGATGTGGCGGTCGATGTAGATCAGGGACGAGCCGTCATCACG                                                                                                                                                                       >  1:14747/1‑172                                                                                                                                                                   TGATGACGGCTCGTCCCTGATCTACATCGACCGCCACATCATCCACGAAGTGACGTCGCCCCAGGCCTTCGAAGGCCTGGGGCGACGTCACTTCGTGGATGATGTGGCGGTCGATGTAGATCAGGGACGAGCCGTCATCACGGCGCTTGACCTCATGGGCTTCCCAGAGTTTGTCGTAGAGCGTTTTGCCAGCCATCAGACTGTTCCTCATCAGCGTCTTTCTATGCCAAAGACCC                                                                         >  1:891834/1‑236                                                                                                                                                                               gcCCCTGATCTACATCGACCGCCACATCATCCACGAAGTGACGTCGCCCCAGGCCTTCGAAGG                                                                                                                                                                                                                                          <  1:132397/61‑1                                                                                                                                                                                                   GCCACATCATCCACGAAGTGACGTCGCCCCAGGCCTTCGAAGGCCTGGGGCGACGTCACTTCGTGGATGATGTGGCGGTCGATGCAGATCAGGGA                                                                                                                                                                                      >  2:1078303/1‑95                                                                                                                                                                                                        ATCATCCACGAAGTGACGTCGCCCCAGGCCTTCGAAGGCCTGGGGCGACGTCACTTCGTGGATGATGTGGCGGTCGATGTAGATCAGGGACGAGCCGTCATCACGGCGCTTGACCTCATGGGCTTCCCAGAGTTTGTCGTAGAGCGTTTTGCCAGCCATCAGACTGTTCCTCATCAGCGTCTTTCTATGCCAAAGACCCCTTGGCTTGTACGGACGATGCTAGGGGGTTAGATTG                                     >  1:64214/1‑235                                                                                                                                                                                                                        CGTCGCCCCAGGCCTTCGAAGGCCTGGGGCGACGTCACTTCGTGGATGATGTGGCGG                                                                                                                                                                                                       >  2:233397/1‑57                                                                                                                                                                                                                                     CTTCGAAGGCCTGGGGCGACGTCACTTCGTGGATGATGTGGCGGTCGATGTAGATCAGGGACGAGCCGTCATCACGGCGCTTGACCTCATGGGCTTCCCAGAGTTTGTCGTAGAGCGTTTTGCCAGCCATCAGACTGTTCCTCATCAGCGTCTTTCTATGCCAAAGACCCCTTGGCTTGTACGGACGATGCTAGGGGGTTAGATTGAATAACTCAAATTCATAATTTTTATGC          >  2:481950/1‑233                                                                                                                                                                                                                                      TTCGAAGGCCTGGGGCGACGTCACTTCGTGGATGATGTGGCGGTCGATGTAGATCAGGGACGAGCCGTCATCACGGCGCTTGACCTCATGGGCTTCCCAGAGTTTGTCGTAGAGCGTTTTGCCAGCCATCAGACTGTTCCTCATCAGCGTCTTTCTATGCCAAAGACCCCTTGGCTTGTACGGACGATGCTAGGGGGTTAGATTGAATAACTCAAATTCATAATTTTTATGCTTTt      >  2:890492/1‑235                                                                                                                                                                                                                                       TCGAAGGCCTGGGGCGACGTCACTTCGTGGATGATGTGGCGGTCGATGTAGATCAGGGACGAGCCGTCATCACGGCGCTTGACCTCATGGGCTTCCCAGAGTTTGTCGTAGAGCGTTTTGCCAGCCATCAGACTGTTCCTCATCAGCGTCTTTCTATGCCAAAGACCCCTTGGCTTGTAC                                                             <  1:630719/180‑1                                                                                                                                                                                                                                          AAGGCCTGGGGCGACGTCACTTCGTGGATGATGTGGCGGTCGATGTAGATCAGGGACGAGCCGTCATCACGGCGCTTGACCTCATGGGCTTCCCAGAGTTTGTCGTAGAGCGTTTTGCCAGCCATCAGACTGTTCCTCATCAGCGTCTTTCTATGCCAAAGACCCCTTGGCTTGTACGGACGATGCTAGGGGGTTAGATTGAATAACTCAAATTCATAATTTTTATGCTTTGGATA  <  1:215633/236‑1                                                                                                                                                                                                                                           AGGCCTGGGGCGACGTCACTTCGTGGATGATGTGGCGGTCGATGTAGATCAGGGACGAGCCGTCATCACGGCGCTTGACCTCATGGGCTTCCCAGAGTTTGTCGTAGAGCGTTTTGCCAGCCATCAGACTGTTCCTCATCAGCGTCTTTCTATGCCAAAGACCCCTTTGCTTGTACGGACGATGCTAGGG                                               >  1:502370/1‑190                                                                                                                                                                                                                                             GCCTGGGGCGACGTCACTTCGTGGATGATGTGGCGGTCGATGTAGATCAGGGACGAGCCGTCATCACGGCGCTTGACCTCATGGGCTTCCCAGAGTTTGTCGTAGAGCGTTTTGCCAGCCATCAGACTGTTCCTCATCAGCGTCTTTCTATGCCAAAGACCCCTTGGCTTGTACGGACGATGCTAGGGGGTTAGATTG                                     <  2:833253/198‑1                                                                                                                                                                                                                                              CCTGGGGCGACGTCACTTCGTGGATGATGTGGCGGTCGATGTAGATCAGGGACGAGCCGTCATCACGGCGCTTGACCTCATGGGCTTCCCAGAGTTTGTCGTAGAGCGTTTTGCCAGCCATCAGACTGTTCCTCATCAGCGTCTTTCTATGCCAAAGACCCCTTGGCTTGTACGGACGATGCTAGGGGGTTAGATTGAATAACTCAAATTCATAATT                 <  2:997666/217‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AAAGCATAAAAATTATGAATTTGAGTTATTCAATCTAACCCCCTAGCATCGTCCGTACAAGCCAAGGGGTCTTTGGCATAGAAAGACGCTGATGAGGAACAGTCTGATGGCTGGCAAAACGCTCTACGACAAACTCTGGGAAGCCCATGAGGTCAAGCGCCGTGATGACGGCTCGTCCCTGATCTACATCGACCGCCACATCATCCACGAAGTGACGTCGCCCCAGGCCTTCGAAGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2250564‑2250804 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggccttcgaaggcctgGGGCGACGTCACTTCGTGGATGATGTGGCGGTCGATGTAGATCAGGGACGAGCCGTCATCACGGCGCTTGACCTCATGGGCTTCCCAGAGTTTGTCGTAGAGCGTTTTGCCAGCCATCAGACTGTTCCTCATCAGCGTCTTTCTATGCCAAAGACCCCTTGGCTTGTACGGACGATGCTAGGGGGTTAGATTGAATAACTCAAATTCATAATTTTTATGCTTTGGATA  <  AE015451/2250786‑2250559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.