New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2827964 =	62 (0.870)	5 (0.070)	5/332	NT	8.9%	coding (140/1209 nt)	PP_2480	putative Xanthine dehydrogenase accessory factor
	?	AE015451	2828049 =	44 (0.650)					coding (225/1209 nt)	PP_2480	putative Xanthine dehydrogenase accessory factor

GCACGCTGAGCAAAGCATCGACCAAGGCGCAAGGGCCGGCCGGCAGGCGCTCGAACAGCACGTGAACCTTGCCGTTACAGCCCAGGCCGAAGCTCAGCGCTTCCTCGCTGGCGTCATCCGCCTCTGCGGTGCTGTAGCTGCGCAGCGCCGGCCCGGCTTCGGTCAGCCACCAAGCCTTTTTCGCCACTTCCGCCTCCAGGCAGCCGCCACTGATGGTGCCCTCGGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2828194‑2827964 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggccggcGCTGCGCAGCTACAGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCCAGCAGCCTGCGGCCATCGCCACGGTAATCGTCAGCTC  >  AE015451/2828049‑2828240                                                                                                                                                                                                                                                                                                                                                                                                                                         GCACGCTGAGCAAAGCATCGACCAAGGCGCAAGGGCCGGCCGGCAGGCGCTCGAACAGCACGTGAACCTTGCCGTTACAGCCCAGGCCGAAGCTCAGCGCTTCCTCGCTGGCGTCATCCGCCTCTGCGGTGCTGTAGCTGCGCAGCGCCGGCCCGGCTTCGGTCAGCCACCAAGCCTTTTTCGCCACTTCCGCCTCCAGGCAGCCGCCACTGATGGTGCCCTCGGGCCGGC                                                                                                                                                                                                  >  2:1141981/1‑231                             GCAAGGGCCGGCCGGCAGGCGCTCGAACAGCACGTGAACCTTGCCGTTACAGCCCAGGCCGAAGCTCAGCGCTTCCTCGCTGGCGTCATCCGCCTCTGCGGTGCTGTAGCTGCGCAGCGCCGGCCCGGCTTCGGTCAGCCACCAAGCCTTTTTCGCCACTTCCGCCTCCAGGCAGCCGCCACTGATGGTGCCCTCGGGCCGG                                                                                                                                                                                                   >  2:1253959/1‑202                                                         AGCACGTGAACCTTGCCGTTACAGCCCAGGCCGAAGCTCAGCGCTTCCTCGCTGGCGTCATCCGCCTCTGCGGTGCTGTAGCTGCGCAGCGCCGGCCCGGCTTCGGTCAGCCACCAAGCCTTTTTCGCCACTTCCGCCTCCAGGCAGCCGCCACTGATGGTGCCCTCG                                                                                                                                                                                                         <  2:489585/168‑1                                                                        CCGTTACAGCCCAGGCCGAAGCTCAGCGCTTCCTCGCTGGCGTCATCCGCCTCTGCGGTGCTGTAGCTGCGCAGCGCCGGCCCGGCTTCGGTCAGCCACCAAGCCTTTTTCGCCACTTCCGCCTCCAGGCAGCCGCCACTGATGGTGCCCTCGGGCCGGCGCTGCGCAGCTA                                                                                                                                                                                      >  1:395435/1‑172                                                                                                                  TCATCCGCCTCTGCGGTGCTGTAGCTGCGCAGCGCCGGCCCGGCTTCGGTCAGCCACCAAGCCTTTTTCGCCACTTCCGCCTCCAGGCAGCCGCCACTGATGGTGCCCTCGGGCCGGCGCTGCGCAGCTACAGCACCGCAGAGGCGGAT                                                                                                                                                                   <  2:579120/149‑1                                                                                                                                       cAGCGGCGCAGCGCCGGCCCGGCTTCGGTCAGCCACCAAGCCTTTTTCGCCACTTCCGCCTCCAGGCAGCCGCCACTGATGGTGCCCTCGGGCCGG                                                                                                                                                                                                   <  2:395430/95‑1                                                                                                                                                                    CAGCCACCAAGCCTTTTTCGCCACTTCCGCCTCCAGGCAGCCGCCACTGATGGTGCCCTCGGGCCGGCGCTGCGCAGCTACAGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCG                                                                                                                                       <  1:449675/127‑1                                                                                                                                                                                    TTCGCCACTTCCGCCTCCAGGCAGCCGCCACTGATGGTGCCCTCG                                                                                                                                                                                                         >  1:1054942/1‑45                                                                                                                                                                                      CGCCACTTCCGCCTCCAGGCAGCCGCCACTGATGGTGCCCTCGGGCCGGCGCTGCGCAGCTACAGCACCGCAGAGGCGGATGA                                                                                                                                                                 <  1:495554/83‑1                                                                                                                                                                                               CGCCTCCAGGCAGCCGCCACTGATGGTGCCCTCGGGCCGGCGCTG                                                                                                                                                                                              <  2:417641/45‑1                                                                                                                                                                                                                    GATGGTGCCCTCGGGCCGGCGCTGCGCAGCTACAGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCCAGCAGCCTGCGGCCATCGCCACGGTAATCGTCAGCTC  <  1:323279/212‑1                                                                                                                                                                                                                               CGGGCCGGCGCTGCGCAGCTACAGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGC                                                                                                                                                  <  2:395379/57‑1                                                                                                                                                                                                                                                                                                                                                                                                                                         GCACGCTGAGCAAAGCATCGACCAAGGCGCAAGGGCCGGCCGGCAGGCGCTCGAACAGCACGTGAACCTTGCCGTTACAGCCCAGGCCGAAGCTCAGCGCTTCCTCGCTGGCGTCATCCGCCTCTGCGGTGCTGTAGCTGCGCAGCGCCGGCCCGGCTTCGGTCAGCCACCAAGCCTTTTTCGCCACTTCCGCCTCCAGGCAGCCGCCACTGATGGTGCCCTCGGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2828194‑2827964 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggccggcGCTGCGCAGCTACAGCACCGCAGAGGCGGATGACGCCAGCGAGGAAGCGCTGAGCTTCGGCCTGGGCTGTAACGGCAAGGTTCACGTGCTGTTCGAGCGCCTGCCGGCCGGCCCTTGCGCCTTGGTCGATGCTTTGCTCAGCGTGCGCGACCGCCAGCAGCCTGCGGCCATCGCCACGGTAATCGTCAGCTC  >  AE015451/2828049‑2828240

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.