New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3283418 =	58 (0.810)	4 (0.060)	4/336	NT	7.1%	coding (807/1230 nt)	PP_2885	putative Transporter
	?	AE015451	3283442 =	49 (0.720)					coding (783/1230 nt)	PP_2885	putative Transporter

CCTCAAACCACAGGCGCTGCCGCACAGCCACGCCCCCAGCCCGGTGCGGCTGAACGACCCGCGCCTGCGCCGGCCGCTGCTGGTGGCATTCAGCGCCATGCTCAGCGTGACCGTGTCACAGATCATCGTCGGTTTCTTTGCCCTTGACCGCTTGCATCTGGGCCCTGCCGAAGCGGCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3283598‑3283418 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccagATGCAAGCGGTCAAGGGCAAAGAAACCGACGATGATCTGTGACACGGTCACGCTGAGCATGGC  >  AE015451/3283442‑3283504                                                                                                                                                                                                                                                      CCTCAAACCACAGGCGCTGCCGCACAGCCACGCCCCCAGCCCGGTGCGGCTGAACGACCCGCGCCTGCGCCGGCCGCTGCTGGTGGCATTCAGCGCCATGCTCAGCGTGACCGTGTCACAGATCATCGTCGGTTTCTTTGCCCTTGACCGCTTGCATCTGGGCCCTGCCGAAGCGGCCCAGATGCAAGCGGTCAAGGGCAAAGAAACCGACGATGATCTGTGACACGGTCACG             >  2:659950/1‑233         CACAGGCGCTGCCGCACAGCCACGCCCCCAGCCCGGTGCGGCTGAACGACCCGCGCCTGCGCCGGCCGCTGCTGGTGGCATTCAGCGCCATGCTCAGCGTGACCGTGTCACAGATCATCGTCGGTTTCTTTGCCCTTGACCGCTTGCATCTGGGCCCTGCCGAAGCGGCCCAGATGCAAGCGGTCAAGGGCAAAGAAACCGACGATGATCTGTGACACGGTCACGCTGAGCATGGC  <  1:659955/236‑1                GCTGCCGCACAGCCACGCCCCCAGCCCGGTGCGGCTGAACGACCCGCGCCTGCGCCGGCCGCTGCTGGTGGCATTCAGCGCCATGCTCAGCGTGACCGTGTCACAGATCCTCGTCGGTTTCTTTGCCCTTGACCGCTTGCATCTGGGCCCTGCCGAAGCGGCCCAGATGCAAGCGGTCAAGGGCAAAGAAACCG                                     <  1:644573/194‑1                                          CGGTGCGGCTGAACGACCCGTGCCTGCGCCGGCCGCTGCTGGTGGCATTCAGCGCCATGCTCAGCGTGACCGTGTCACAGATCATCGTCGGTTTCGTTGCCCTTGAGCGCTTGCATCTGGGCCCTGCCGAAGCGGCCCAGATGCAAGCGGTCAAGGCCAAAGAAACCGACGATGATCTGTGACA                     <  1:1211560/184‑1                                                                                                                                                                                                                                                      CCTCAAACCACAGGCGCTGCCGCACAGCCACGCCCCCAGCCCGGTGCGGCTGAACGACCCGCGCCTGCGCCGGCCGCTGCTGGTGGCATTCAGCGCCATGCTCAGCGTGACCGTGTCACAGATCATCGTCGGTTTCTTTGCCCTTGACCGCTTGCATCTGGGCCCTGCCGAAGCGGCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3283598‑3283418 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccagATGCAAGCGGTCAAGGGCAAAGAAACCGACGATGATCTGTGACACGGTCACGCTGAGCATGGC  >  AE015451/3283442‑3283504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.