New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3561096	57 (0.800)	4 (0.060)	4/334	NT	6.9%	coding (851/1377 nt)	tdcG‑III	L‑serine dehydratase
	?	AE015451	= 3561107	54 (0.790)					coding (862/1377 nt)	tdcG‑III	L‑serine dehydratase

GCCGAGGTGCGCGAAGGCTTGTTGCGCATCTGGGCGGCCATGCGTGAGTGCGTGGCGAACGGCCTGCGCAACGAGGGCATCCTGCCGGGCGGCTTGCACGTCAAGCGCCGCGCCGCGCGGTTGCATCGCAGCCTGCAGGAGCTGGGCAAGCCCAACGTGATCGGCTCGACCCTTGGTGCCATGGAGTGGGTCAACCTGTTCGCCTTGGCGGTCAATGAAGAAAATGCTGCCGGTGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3560858‑3561096 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgggcgCGGTAACCATACGCCCACCGGCAGCATTTTCTTCATTGACCGCCAAGGCGAACAGGTTGACCCACTCCATGGCACCAAGGGTCGAGCCGATCACGTTGGGCTTGCCCAGCTCCTGCAGGCTGCGATGCAACCGCGCGGCGCGGCGCTTGACGTGCAAGCCGCCCGGCAGGATGCCCTCGTTGCGCAGGCCGTTCGCCACGCACTCACGCATGGCCGCCCAGATGC  <  AE015451/3561107‑3560883                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCCGAGGTGCGCGAAGGCTTGTTGCGCATCTGGGCGGCCATGCGTGAGTGCGTGGCGAACGGCCTGCGCAACGAGGGCATCCTGCCGGGCGGCTTGCACGTCAAGCGCCGCGCCGCGCGGTTGCATCGCAGCCTGCAGGAGCTGGGCAAGCCCAACGTGATCGGCTCGACCCTTGGTGCCATGGAGTGGGTCAACCTGTTCGCCTTGGCGGTCAATGAAGAAAATGCTGCCGGTGG                                                                                                                                                                                                                                      <  1:200445/236‑1                             TCTGGGCGGCCATGCGTGAGTGCGTGGCGAACGGCCTGCGCAACGAGGGCATCCTGCCGGGCGGCTTGCACGTCAAGCGCCGCGCCGCGCGGTTGCATCGCAGCCTGCAGGAGCTGGGCAAGCCCAACGTGATCGGCTCGACCCTTGGTGCCATGGAGTGGGTCAACCTGTTCGCCTTGGCGGTCAATGAAGAAAATGCTGCCGGTGG                                                                                                                                                                                                                                      <  2:653801/208‑1                                                                                                                                                                         ACCATTGGTGCCATGGAGTGGGTCAACCTGTTCGCCTTGGCGGCCAATGAAGAAAATGCTGCCG                                                                                                                                                                                                                                          <  2:600237/64‑1                                                                                                                                                                                        GAGTGGGTCAACCTGTTCGCCTTGGCGGTCAATGAAGAAAATGCTGCCGGTGGGCGCGGTAACCATACGCCCACCGGCAGCATTTTCTTCATTGACCGCCACGGCGAACAGGTTGACCCACTCCATGGCACCAAGGGTCGAGCCGATCACGTTGGGCTTGCCCAGCTCCTGCAGGCTGCGATGCAACCGCGCGGCGCGGCG                                                                                  >  2:1093157/1‑201                                                                                                                                                                                              GTCAACCTGTTCGCCTTGGCGGTCAATGAAGAAAATGCTGCCGGTGGGCGCGGTAACCATACGCCCACCGGCAGCATTTTCTTCATTGACCG                                                                                                                                                                                         >  2:906314/1‑92                                                                                                                                                                                                 AACCTGTTCGCCTTGGCGGTCAATGAAGAAAATGCTGCCGGTGGGCGCGGTAACCATACGCCCACCGGCAGCATTCTCTTCATTGACCGCCAAGG                                                                                                                                                                                   >  1:1281120/1‑95                                                                                                                                                                                                  ACCTGTTCGCCTTGGCGGTCAATGAAGAAAATGCTGCCGGTGGG                                                                                                                                                                                                                                     >  2:1018833/1‑44                                                                                                                                                                                                      GTTCGCCTTGGCCGTCCATGAAGAAAATGCTGACGGTGGGCGCGGTAACCTGACGACCACCGGCAGCATTTTCGTTGTTGACCGCCAAGGCGAACAGGTTGACCCACTCCATGGCAC                                                                                                                                                        >  2:608008/1‑117                                                                                                                                                                                                                                       CGGTGGGCGCGGTAACCATACGCCCACCGGCAGCATTTTCTTCATTGACCGCCAAGGCGAACAGGTTGACCCACTCCATGGCACCAAGGGTCGAGCCGATCACGTTGGGCTTGCCCAGCTCCTGCAGGCTGCGATGCAACCGCGCGGCGCGGCGCTTGACGTGCAAGCCGCCCGGCAGGATGCCCTCGTTGCGCAGGCCGTTCGCCACGCACTCACGCATGGCCGCCCAGATGC  >  2:881338/1‑234                                                                                                                                                                                                                                        GGTGGGCCCGGTAACCATACGCCCACCGGCAGCATTTTCCTCATTGACCGCCAAGGCGAACAGGTTGACCCACTCCATGGCACCAAGGGTCGAGCCGATCACGTTGGGCTTGCCCAGCTCCTGCAGGCTGCGATGCAACCGCGCGGCGCGGCGCTTGACGTGCAAGCCGCCCGGCAGGATGCCC                                                   <  1:1070571/184‑1                                                                                                                                                                                                                                          TGGGCGCGGTAACCATACGCCCACCGGCAGCATTTTCTTCATTGACCGCCAAGGCGAACAGGTTGACCCACTCCATGGCACCAAGGGTCGAGCCGATCACGTTGGGCTTGCCCAGCTCCTGCAGGCTGCGATGCAACCGCGCGGCGCGGCGCTTGACGTGCAAGCCGCCCGGCAGGATGCCCTCGTTGCGCAGGCCGTTCGCCACGCACTCACGCA                 <  1:1068536/216‑1                                                                                                                                                                                                                                             GCGCGGTAACCATACGCCCACCGGCAGCATTTCCTTCATTGACCGCCAAGGCCAACAGGTTGACCCACTCCATGGCACCAAGGGTCGAGCCGATCACGTTGGGCTTGCCCAGCTCCTGCAGGCTGCGATGCAACCGCGCGG                                                                                         <  2:579901/141‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCCGAGGTGCGCGAAGGCTTGTTGCGCATCTGGGCGGCCATGCGTGAGTGCGTGGCGAACGGCCTGCGCAACGAGGGCATCCTGCCGGGCGGCTTGCACGTCAAGCGCCGCGCCGCGCGGTTGCATCGCAGCCTGCAGGAGCTGGGCAAGCCCAACGTGATCGGCTCGACCCTTGGTGCCATGGAGTGGGTCAACCTGTTCGCCTTGGCGGTCAATGAAGAAAATGCTGCCGGTGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3560858‑3561096 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgggcgCGGTAACCATACGCCCACCGGCAGCATTTTCTTCATTGACCGCCAAGGCGAACAGGTTGACCCACTCCATGGCACCAAGGGTCGAGCCGATCACGTTGGGCTTGCCCAGCTCCTGCAGGCTGCGATGCAACCGCGCGGCGCGGCGCTTGACGTGCAAGCCGCCCGGCAGGATGCCCTCGTTGCGCAGGCCGTTCGCCACGCACTCACGCATGGCCGCCCAGATGC  <  AE015451/3561107‑3560883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.