| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 4417302 | 73 (1.020) | 4 (0.060) | 4/330 | NT | 4.9% | coding (195/552 nt) | PP_3905 | Transcriptional regulator, LuxR family |
| ? | AE015451 | = 4417570 | 86 (1.280) | coding (463/552 nt) | PP_3905 | Transcriptional regulator, LuxR family | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AATTTGCCTCAACGGTTGTAGGGACTTGAGAGGCTACCACGGCCCGGCGTGGCTAAACATCCGGGCACCATCAATATGCCACCACACGCTGGTGGTCCGATCGACCTGGTTCCCCATCACCAGGCTGCATCGGTCGTGGCGTTCGCCCTCCCCTGGTCCGGGAGGTTCATGGCAGCGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCATGGACACGATCACTATCGGCGCATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/4417060‑4417302‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgcatggGGTCGCTGTCGTCGATCACCGCATGCATGGCGATGAGGCTGGCAAGCAGGATGCAGAGAGGGCTGATGATCTGGCGACGCATT < AE015451/4417570‑4417488 AATTTGCCTCAACGGTTGTAGGGACTTGAGAGGCTACCACGGCCCGGCGTGGCTAAACATCCGGGCACCATCAATATGCCACCACACGCTGGTGGTCCGATCGACCTGGTTCCCCATCACCAGGCTGCATCGGTCGTGGCGTTCGCCCTCCCCTGGTCCGGGAGGTTCATGGCAGCGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCATGGACACGATCACTATCGG < 1:1051932/236‑1AATTTGCCTCAACGGTTGTAGGGACTTGAGAGGCTACCACGGCCCGGCGTGGCTAAACATCCGGGCACCATCAATATGCCACCACACGCTGGTGGTCCGATCGACCTGGTTCCCCATCACCAGGCTGCATCGGTCGTGGCGTTCGCCCTCCCCTGGTCCGGGAGGTTCATGGCAGCGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCATGGACACGATCACTATCGG < 1:1162057/236‑1 TTGCCTCAACGGTTGTAGGGACTTGAGAGGCTACCACGGCCCGGCGTGGCTAAACATCCGGGCACCATCAATATGCCACCACACGCTGGTGGTCCGATCGACCTGGTTCCCCATCACCAGGCTGCATCGGTCGTGGCGTTCGCCCTCCCCTGGTCCGGGAGGTTCATGGCAGCGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCATGGACACGATCACTATCGG < 2:473818/233‑1 AACGGTTGTAGGGACTTGAGAGGCTACCACGGCCCGGCGTGGCTAAACATCCGGGCACCATCAATATGCCACCACACGCTGGTGGTCCGATCGACCTGGTTCCCCATCACCAGGCTGCATCGGTCGTGGCGTTCGCCCTCCCCTGGTCCGGGAGGTTCATGGCAGCGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCATGGACACGATCACTATCGGC > 2:1269700/1‑227 CTACCACGGCCCGGCGTGGCTAAACATCCGGGCACCATCAATATGCCACCACACGCTGGTGGTCCGATCGACCTGGTTCCCCATCACCAGGCTGCATCGGTCGTGGCGTTCGCCCTCCCCTGGTCCGGGAGGTTCATGGCAGCGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCATGGACACGATCACTATCGGCGCATGGGGTCGCTGTCGTCGATCACCGCATGC < 1:177076/236‑1 GCTGGTGGTCCGATCGACCTGGTTCCCCATCACCAGGCTGCATCGGTCGTGGCGTTCGCCCTCCCCTGGTCCTGGAGGCTCATGGCAGAGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCATGGACACGATCACTATCGG > 1:1209685/1‑149 GTGGTCCGATCGACCTGGTTCCCCATCACCAGGCTGCATCGGTCGTGGCGTTCGCCCTCCCCTGGTCCGGGAGGTTCATGGCAGCGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCATGGACACGACCACTATCGGCGCATGG > 1:586600/1‑152 GTTCGCCCTCCCCTGGTCCGGGAGGTTCATGGCAGCGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCATGGACACGATCACTATCGGCGCATGGGGTCGCTGTCGTCGATCACCGCATGCATGGCGATGAGGCTGGCAA > 1:219922/1‑148 GTTCGCCCTCCCCTGGTCCGGGAGGTTCATGGCAGCGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCATGGACACGATCACTATCGGCGCATGGGGTCGCTGTCGTCGATCACCGCATGCATGGCGATGAGGCTGGCAA < 2:219919/148‑1 cGCCAACCACCGAGATCAAATCATGGCCACGATCACTATCGGCGCATGGGGTCGCTGTCGTCGATCACCGCATGCATGGCGATGAGGCTGGCAAGCAGGATGCAGAGAGGGCTGATGATCTGGCGACGCATT < 2:599793/131‑1 AATTTGCCTCAACGGTTGTAGGGACTTGAGAGGCTACCACGGCCCGGCGTGGCTAAACATCCGGGCACCATCAATATGCCACCACACGCTGGTGGTCCGATCGACCTGGTTCCCCATCACCAGGCTGCATCGGTCGTGGCGTTCGCCCTCCCCTGGTCCGGGAGGTTCATGGCAGCGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCATGGACACGATCACTATCGGCGCATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/4417060‑4417302‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgcatggGGTCGCTGTCGTCGATCACCGCATGCATGGCGATGAGGCTGGCAAGCAGGATGCAGAGAGGGCTGATGATCTGGCGACGCATT < AE015451/4417570‑4417488 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |