New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4417589 =	100 (1.400)	8 (0.120)	7/322	NT	8.0%	coding (482/552 nt)	PP_3905	Transcriptional regulator, LuxR family
	?	AE015451	4417603 =	93 (1.420)					coding (496/552 nt)	PP_3905	Transcriptional regulator, LuxR family

CCCTTGCCAGATGCTTGGTAGCGCGGGGCTCCCTGTGCGATTCTGGCGAAGGCTTCGTTGCGCGCTTCCTGGCTGCGTTCAAGCAACGCTGCGAGCACCATTCGCTTGTCCTCGAAAGCTTTATGCACGGCTGTCTGCATGTGGTGATCCTCGGGTGGGTCAGGCGTGGTATTCGAAGGCCTCGGCCTTGCGAACGATTCGAACTTGGGCGGTGCGGCGCTCCGGAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4417818‑4417589 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctccggagcgcCGCACCGCCCAAGTTCGAATCGTTCGCAAGGCCGAGGCCTTCGAATACCACGCCTGACCCACCCGAGGATCACCACATGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGC  >  AE015451/4417603‑4417755                                                                                                                                                                                                                                                                                                                                                                                                 CCCTTGCCAGATGCTTGGTAGCGCGGGGCTCCCTGTGCGATTCTGGCGAAGGCTTCGTTGCGCGCTTCCTGGCTGCGTTCAAGCAACGCTGCGAGCACCATTCGCTTGTCCTCGAAAGCTTTATGCACGGCTGTCTGCATGGGGTGATCCTCGGGTGGGTCAGGCGTGGTATTCGAAGGCCTCGGCCTTGCGAACGGTTCGAACTTGGGCGGTGCGG                                                                                                                                                                        >  1:228989/1‑217                  GTAGCGCGGGGCTCCCTGTGCGATTCTGGCGAAGGCTTCGTTGCGCGCTTCCTGGCTGCGTTCAAGCAACGCTGCGAGCACCATTCGCGTGTCCTCGAAAGCTTTATGCACGGCTGTCTGCATGTGGTGATCCTCGGGTGGGTCAGGCGTGGTATTCGAAGGCCTCGGCCTTGCGAACGATTCGAACTTGGGCGGTGCGGCGCT                                                                                                                                                                    <  2:387442/204‑1                                        ATTCTGGCGAAGGCTTCGTTGCGCGCTTCCTGGCTGCGTTCAAGCAACGCTGCGAGCACCATTCGCTTGTCCTCGAAAGCTTTATGCACGGCTGTCTGCATGTGGTGATCCTCGGGTGGGTCAGGCGTGGTATTCGAAGGCCTCGGCCTTGCGAACGATTCGAACTTGGGCGGTGCGGCGCTCCGGAGCGCCGCACCGCCCAAGTTC                                                                                                                                           <  1:1076320/207‑1                                        ATTCTGGCGAAGGCTTCGTTGCGCGCTTCCTGGCTGCGTTCAAGCAACGCTGCGAGCACCATTCGCTTGTCCTCGAAAGCTTTATGCACGGCTGTCTGCATGTGGTGATCCTCGGGTGGGTCAGGCGTGGTATTCGAAGGCCTCGGCCTTGCGAACGATTCGAACTTGGGCGGTGCGGCGCT                                                                                                                                                                    <  2:965898/182‑1                                                                                                                TCGAAAGCTTTATGCACGGCTGTCTGCATGTGGTGATCCTCGGGTGGGTCAGGCGTGGTATTCGAAGGCCTCGGCCTTGCGAACGATTCGAACTTGGGCGGTGCGGCGCTCCGGAGCGCCGCACCG                                                                                                                                                    >  1:1264924/1‑126                                                                                                                TCGAAAGCTTTATGCACGGCTGTCTGCATGTGGTGATCCTCGGGTGGGTCAGGCGTGGTATTCGAAGGCCTCGGCCTTGCGAACGATTCGAACTTGGGCGGTGCGGCGCTCCGGAGCGCCGCACCG                                                                                                                                                    <  2:1264919/126‑1                                                                                                                                         GCATGTGGTGATCCTCGGGTGGGTCAGGCGTGGTATTCGAAGGCCTCGGCCTTGCGAACGATTCGAACTTGGGCGGTGCGGCGCTCCGGAGCGCCGCACCGCCCca                                                                                                                                               >  1:697904/1‑104                                                                                                                                         GCATGTGGTGATCCTCGGGTGGGTCAGGCGTGGTATTCGAAGGCCGCGGCCTTGCGAACGATTCGAACGTGGGCGGTGCGGCGCGCCGGAGCGCCGCACCGCCCAAGTTCGAATCGTTCGCAAGGCCGAGGCCTTCGAATACCA                                                                                                         >  2:555955/1‑144                                                                                                                                           attTGGTGGTCCTCGGGTGGGTCAGGCGTGGTATTCGACGGCCTCGGCCTTGCGAACGATTCGAACTTGGGCGGTGCGGCGCTCCGGAGCGCCGCACCGCCCAAGTTCGAATCGTTCGCAAGGCCGAGGCCTTCGAATACCACGCCT                                                                                                    <  1:477362/144‑1                                                                                                                                                           GTGGGTCAGGCGTGGTATTCGAAGGCCTCGGCCTTGCGAACGATTCGAACTTGGGCGGTGCGGCGCTCCGGAGCGCCGCACCGCCCAAGTTCGAATCGTTCGCAAGGCCGAGGCCTTCGAATACCA                                                                                                         >  2:1001138/1‑126                                                                                                                                                                   GGCGTGGTATTCGAAGGCCTCGGCCTTGCGAACGATTCGAACTTGGGCGGTGCGGCGCTCCGGAGCGCCGCACCGCCCAAGTTCGAATCGTTCGCAAGGCCGAGGCCTTCGAATACCACGCCTGACCCACCCG                                                                                          >  2:603841/1‑133                                                                                                                                                                                                                          CGCTCCGGAGCGCCGCACCGCCCAAGTTCGAATCGTTCGCAAGGCCGAGGCCTTCGAATACCACGCCTGACCCACCCGAGGATCACCACATGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGC  >  2:511124/1‑166                                                                                                                                                                                                                               CGGCGCGCCGCAGCGCCCAAGTTCGAATCGTTCGCAAGGCCGAGGCCTTCGAATACCACGCCT                                                                                                    <  1:678923/63‑1                                                                                                                                                                                                                                                                                                                                                                                                 CCCTTGCCAGATGCTTGGTAGCGCGGGGCTCCCTGTGCGATTCTGGCGAAGGCTTCGTTGCGCGCTTCCTGGCTGCGTTCAAGCAACGCTGCGAGCACCATTCGCTTGTCCTCGAAAGCTTTATGCACGGCTGTCTGCATGTGGTGATCCTCGGGTGGGTCAGGCGTGGTATTCGAAGGCCTCGGCCTTGCGAACGATTCGAACTTGGGCGGTGCGGCGCTCCGGAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4417818‑4417589 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctccggagcgcCGCACCGCCCAAGTTCGAATCGTTCGCAAGGCCGAGGCCTTCGAATACCACGCCTGACCCACCCGAGGATCACCACATGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGC  >  AE015451/4417603‑4417755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.