New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 4418726 = | 85 (1.190) | 8 (0.120) | 7/326 | NT | 9.0% | coding (242/351 nt) | PP_3908 | conserved protein of unknown function |
? | AE015451 | 4418770 = | 82 (1.230) | coding (286/351 nt) | PP_3908 | conserved protein of unknown function |
CGCGAGAAGTTCGAAAAGGGTGAAGTCAGCAACTTCGATGACGTGGAGGAGCTGGTGAAAAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/4418971‑4418726 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgcgtcagTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTACAACCTTTTTCACCAGCTCCTCCACGTCATCGAAGTTGCTGACTTCACCCTTTTCGAACTTCTCGCGCGCCAGCTCCTCAGCCTCGCTGATGTCGC > AE015451/4418770‑4419000 CGCGAGAAGTTCGAAAAGGGTGAAGTCAGCAACTTCGATGACGTGGAGGAGCTGGTGAAAAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCT < 1:1216685/236‑1 GAAGTTCGAAAAGGGTGAAGTCAGCAACTTCGATGACGTGGAGGAGCTGGTGAAAAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGC > 1:1187010/1‑236 GAAGTTCGAAAAGGGTGAAGTCAGCAACTTCGATGACGTGGAGGAGCTGGTGAAAAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCG < 2:657036/235‑1 ATGACGTGGAGGAGCTGGTGAAAAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGT < 2:583864/206‑1 gGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGCCTCAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATTGGCCGAGCTTAA < 1:267114/192‑1 CTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGG < 2:66932/154‑1 TGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGC > 1:536772/1‑147 GCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGAACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTAC < 2:1251007/176‑1 cCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCGCGGCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTGTGGCGAGATGTAAAAAGCGGGCGCGT < 2:230154/127‑1 TCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGAGCCAGTTTTGGCGAGATGTAAAAAGCTGGC > 2:341691/1‑124 GACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGAC < 1:198800/196‑1 gtGCGGTGGCACTAGCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGC < 1:13267/166‑1 CTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTG > 2:939845/1‑87 GTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGT < 1:174195/142‑1 TCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTG < 1:1144464/142‑1 GAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGGCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGAC < 2:791493/114‑1 TGTAAAAAGCTGGCGCGTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGG < 2:59271/62‑1 ccaacCTGGCGCGTCAGTACAACGACGCGACATTGGCCGAGCTTAAGCGTGACCCAGGCGACGAGATAGTGCCCCCGCTATGACGATCGCCCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGC < 2:114218/138‑1 GTCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTACAACCTTTTTCACCAGCTCCTCCACGTCATCGAAGTTGCTGACTTCACCCTTTTCGAACTTCTCGCGCGCCAGCTCCTCAGCCTCGCTGATGTCGC < 1:44416/236‑1 TCAGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTACAACCTTTTTCACCAGCTCCTCCACGTCATCGAAGTTGCTGACTTCACCCTTTTCGAACTTCTCGCGCGCCAGCTCCTCAGCCTCGCTGAT > 2:1028699/1‑230 AGTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTGCAACCTTTTTCACCAGCTCCTCCACGTCATCGAAGTTGCTGACTTCACCCTTTTCGAACTTCTCGCGCGCCAGCTCCTCAGCCTCGCTGATGT < 2:956246/230‑1 GTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTACAACCTTTTTCACCAGCTCCTCCACGTCATCGAAGTTGCTGACTTCACCCTTTTCGAACTTCTCGCGCGC > 1:238147/1‑206 CGCGAGAAGTTCGAAAAGGGTGAAGTCAGCAACTTCGATGACGTGGAGGAGCTGGTGAAAAAGGTTGTAGCGGTCTGCGAAGAGCTCGGCGCTGAAGAGTGCTTCAGCTGCGACTTCGACTAAGGAAGGTCGATCGTCATAGCGGTGGCACTATCTCGTCGCCTGGGTAACGCTTAAGCTCGGCCAATGTCGCGTCGTTGAACTGACGCGCCAGTTTTGGCGAGATGTAAAAAGCTGGCGCGTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/4418971‑4418726 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgcgtcagTTCAACGACGCGACATTGGCCGAGCTTAAGCGTTACCCAGGCGACGAGATAGTGCCACCGCTATGACGATCGACCTTCCTTAGTCGAAGTCGCAGCTGAAGCACTCTTCAGCGCCGAGCTCTTCGCAGACCGCTACAACCTTTTTCACCAGCTCCTCCACGTCATCGAAGTTGCTGACTTCACCCTTTTCGAACTTCTCGCGCGCCAGCTCCTCAGCCTCGCTGATGTCGC > AE015451/4418770‑4419000 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |