New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4802287	55 (0.770)	3 (0.040)	3/336	NT	5.4%	coding (59/567 nt)	PP_4230	conserved exported protein of unknown function
	?	AE015451	= 4802291	53 (0.770)					coding (55/567 nt)	PP_4230	conserved exported protein of unknown function

GTCAGCCAGCGAAGCGGCACCGGCCGCCAGGCTATGGCCCATGCCCAATGTGAAATTTGGACTGGAGACCACCCTGCACCGCGCAGGCAACCCCAGGTCCACGCCTCGCTCCCCTTCACGCAACACCACCCGCACATCATCGAACACTGCGCAGGCGCTCTCTACGCTGTGTACCAGCAAGCTTCGACCGTCAGCCATCAGCGAACGGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4802076‑4802287 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgctGACAAGCGCCGTTCGCTGATGGCTGACGGTCGAAGCTTGCTGGTACACAGCGTAGAGAGCGCCTGCGCAGTGTTCGATGATGTGCGGGTGGTGTTGCGTGAAGGGGAGCGAGGCGTGGACCTGGGGTTGCCTGCGCGGTGCAGGGTGGTCTCCAGTCCAAATTTCACATTGGGCATGGGCCATAGCCTGGCGGCCGGTGCCGCTTCGCTGGCTGACAGCGAGGCGCAGGCA  <  AE015451/4802291‑4802061                                                                                                                                                                                                                                                                                                                                                                                                                                                             GTCAGCCAGCGAAGCGGCACCGGCCGCCAGGCTATGGCCCATGCCCAATGTGAAATTTGGACTGGAGACCACCCTGCACCGCGCAGGCAACCCCAGGTCCACGCCTCGCTCCCCTTCACGCAACACCACCCGCACATCATCGAACACTGCGCAGGCGCTCTCTACGCTGTGTACCAGCAAGCTTCGACCGTCAGCCATCAGCGAACGGCG                                                                                                                                                                                                                                           >  1:328208/1‑210                                                                                                                               CACCCGCACATCATCGAACACTGCGCAGGCGCTCTCTACGCTGTGTACCAGCAAGCTTCGACCGTCAGCCATCAGCGAACGGCGCTGACAACCGCCGTTCGCTGATGGCTGACGGTCGCAGCTGGCTGGTACACA                                                                                                                                                                                        >  2:289614/1‑135                                                                                                                                         TCATCGAACACTGCGCAGGCGCTCTCTACGCTGTGTACCAGCAAGCATCGACCGTCAGCCATCAGCGAACGGCGCTGACAAGCGCCGTTCGCTGATGGCTGg                                                                                                                                                                                                               >  2:819125/1‑101                                                                                                                                                                             ACCAGCAAGCTTCGACCGTCAGCCATCAGCGAACGGCGCTGACAAGCGCCGTTCGCTGATGGCTGACGGTCGAAGCTTGCTGGTACACAGCGTAGAGAGCGCCTGCGCAGTGTTCGATGATGTGCGGGTGGTGTTGCGTGAAGGGGAGCGAGGCGTGGACCTGG                                                                                                             >  2:328203/1‑164                                                                                                                                                                                                              CGGCGCTGACAAGCGCCGTTCGCTGATGGCTGACGGTCGAAGCTTGCTGGTACACAGCGTAGAGAGCGCCTGCGCAGTGTTCGATGATGTGCGGGTGGTGTTGCGTGAAGGGGAGCGAGGCGTGGACCTGGGGTTGCCTGCGCGGTGCAGGGTGGTCTCCAGTCCAAATTTCACATTGGGCATGGGCCATAGCCTGGCGGCCGGTGCCGCTTCGCTGGC                     <  1:539857/219‑1                                                                                                                                                                                                               GGCGCTGACAAGCGCCGTTCGCTGATGGCTGACGGTCGAAGCTTGCTGGTACACAGCGTAGAGAGCGCCTGCGCAGTGTTCGATGATGTGCGGGTGGTGTTGCGTGAAGGGGAGCGAGGCGTGGACCTGGGGTTGCCTGCGCGGTGCAGGGTGGTCTCCAGTCCAAATTTCACATTGGGCATGGGCCATAGCCTGGCGGCCGGTGCCGCTTCGCTGGCTGA                  >  2:312105/1‑221                                                                                                                                                                                                                GCGCTGACAAGCGCCGTTCGCTGATGGCTGACGGTCGAAGCTTGCTGGTACACAGCGTAGAGAGCGCCTGCGCAGTGTTCGATGATGTGCGGGTGGTGTTGCGTGAAGGGGAGCGAGGCGTGGACCTGGGGTTGCCTGCGCGGTGCAGGGTGGTCTCCAGTCCAAATTTCACATTGGGCATGGGCCATAGCCTGGCGGCCGGTGCCGCTTCGCTGGCTGACAGCGAGGCGCAGGCA  >  1:1137784/1‑236                                                                                                                                                                                                                GCGCTGACAAGCGCCGTTCGCTGATGGCTGACGGTCGAAGCTTGCTGGTACACAGCGTAGAGAGCGCCTGCGCAGTGTTCGATGATGTGCGGGTGGTGTTGCGTGAAGGGGAGCGAGGCGTGGACCTGGGGTTGCCTGCGCGGTGCAGGGTGGTCTCCAGTCCAAATTTCACATTGGGCATGGGCCATAGCCTGGCGGCCGGTGCCGCTTCGCTGGCTGACAGCGAGGCGCAGGC   <  1:1192347/235‑1                                                                                                                                                                                                                GCGCTGACAAGCGCCGTTCGCTGATGGCTGACGGTCGAAGCTTGCTGGTACACAGCGTAGAGAGCGCCTGCGCAGTGTTCGATGATGTGCGGGTGGTGTTGCGTGAAGGGGAGCGAGGCGTGGACCTGGGGTTGCCTGCGCGGTGCAGGGTGGTCTCCAGTCCAAATTTCACATTGGGCATGGGCCATAGCCTGGCGGCCGGTGCCGCTTCGCTGGCTGACAGCGAGGCGCAGGC   <  1:1280941/235‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                             GTCAGCCAGCGAAGCGGCACCGGCCGCCAGGCTATGGCCCATGCCCAATGTGAAATTTGGACTGGAGACCACCCTGCACCGCGCAGGCAACCCCAGGTCCACGCCTCGCTCCCCTTCACGCAACACCACCCGCACATCATCGAACACTGCGCAGGCGCTCTCTACGCTGTGTACCAGCAAGCTTCGACCGTCAGCCATCAGCGAACGGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4802076‑4802287 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgctGACAAGCGCCGTTCGCTGATGGCTGACGGTCGAAGCTTGCTGGTACACAGCGTAGAGAGCGCCTGCGCAGTGTTCGATGATGTGCGGGTGGTGTTGCGTGAAGGGGAGCGAGGCGTGGACCTGGGGTTGCCTGCGCGGTGCAGGGTGGTCTCCAGTCCAAATTTCACATTGGGCATGGGCCATAGCCTGGCGGCCGGTGCCGCTTCGCTGGCTGACAGCGAGGCGCAGGCA  <  AE015451/4802291‑4802061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.