New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5378518	74 (1.040)	3 (0.040)	3/328	NT	4.5%	coding (103/1674 nt)	recN	factor used in recombination and DNA repair
	?	AE015451	= 5378861	59 (0.880)					coding (446/1674 nt)	recN	factor used in recombination and DNA repair
Rejected: Frequency below/above cutoff threshold.

GCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGGGAGCCGACCCCATGCTGGTGCACCTGTCCATTCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5378279‑5378518 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgccggcaTACTCGTCAAGCAGGCGACGGTGGGTGTCGGTCTTGAGCAGGGACTGGTGCTCGTGCTGGCTGTGGATATCGATCAGCAGTTCGCCCAGCGCCTTGAGGTCGCCGAGCGGGCAGGGCGTGCCGTTGATGTAGCCGCGGCTGCGGCCTTCGGCGGTGATCACCCGGCGCAAGATGCACAGGCCTTCGTTGTCCAGGTCGCGCTCGGCCAGCCAGGTGTGCGCTT  <  AE015451/5378861‑5378639                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGGGAGCCGACCCCATGCTGGTGCACCTGTCCATTCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGC                                                                                                                                                                                                                                        <  2:811262/233‑1             CGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGGGAGCCGACCCCATGCTGGTGCACCTGTCCATTCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCcg                                                                                                                                                                                                                                      >  2:781079/1‑221              GGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGGGAGCCGACCCCATGCTGGTGCACCTGTCCATTCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGG                                                                                                                                                                                                                                         >  1:406401/1‑219                            CAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGGGAGCCGACCCCATGCTGGTGCACCTGTCCATTCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCG                                                                                                                                                                                                                                          <  2:1062048/204‑1                                              TCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGCGAGCCGACCCCATGCTGGTGCACCTGTCCATTCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGC                                                                                                                                                                                                                                      >  2:1185120/1‑190                                                                                                                                                                                                  AATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCATACTCGTCAAGCAGGCGACGGTGGGTGGCGGGCTTGAGCAGGGACTGGTGCTCGTGCTGGCTGTGGATATCGATCAGCAGTTGGCCCAGCGCCTGGAGCGCGCCGAGCGGGCAGGGCGg                                                                                                          >  1:840734/1‑165                                                                                                                                                                                                     CGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCATACTCGTCAAGCAGGCGACGGTGGGTGTCGGTCTTGAGCAGGGACTGGTGCTCGTGCTGGCTGTGGATATCGATCAGCAGTTCGCCCAGCGCCTTGAG                                                                                                                               <  1:449867/142‑1                                                                                                                                                                                                     CGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCATACTCGTCAAGCAGGCGACGGTGGGTGGCGGTCTTGAGCAGGGACTGGTGCTCGTGCTGGCTGTGGATATCGATCAGCAGTTCGCCCAGCGCCTTGAG                                                                                                                               >  2:449862/1‑142                                                                                                                                                                                                                                        GCGCCGGCATACTCGTCAAGCAGGCGACGGTGGGTGTCGGTCTTGAGCAGGGACTGGTGCTCGTGCTGGCTGTGGATATCGATCAGCAGTTCGCCCAGCGCCTTGAGGTCGCCGAGCGGGCAGGGCGTGCCGTTGATGTAGCCGCGGCTGCGGCCTTCGGCGGTGATCACCCGGCGCAAGATGCACAGGCCT                                          <  2:469482/192‑1                                                                                                                                                                                                                                         CGCCGGCATACTCGTCAAGCAGGCGACGGTGGGTGTCGGTCTTGAGCAGGGACTGGTGCTCGTGCTGGCTGTGGATATCGATCAGCAGTTCGCCCAGCGCCTTGAGGTCGCCGAGCGGGCAGGGCGTGCCGTTGATGTAGCCGCGGCTGCGGCCTTCGGCGGTGATCACCCGGCGCAAGAT                                                    <  2:494717/181‑1                                                                                                                                                                                                                                           CCGGCATACTCGTCAAGCAGGCGACGGTGGGTGTCGGTCTTGAGCAGGGACTGGTGCTCGTGCTGGCTGTGGATATCGATCAGCAGTTCGCCCAGCGCCTTGAGGTCGCCGAGCGGGCAGGGCGTGCCGTTGATGTAGCCGCGG                                                                                       <  2:1171261/144‑1                                                                                                                                                                                                                                             GGCATACTCGTCAAGCAGGCGACGGTGGGTGTCGGTCTTGAGCAGGGACTGGTGCTCGTGCTGGCTGTGGATATCGATCAGCAGTTCGCCCAGCGCCTTGAGGTCGCCGAGCGGGCAGGGCGTGCCGTTGATGTAGCCGCGGCT                                                                                     <  2:100402/144‑1                                                                                                                                                                                                                                              GCATACTCGTCAAGCAGGCGACGGTGGGTGTCGGTCTTGAGCAGGGACTGGTGCTCGTGCTGGCTGTGGATATCGATCAGCAGTTCGCCCAGCGCCTTGAGGTCGCCGAGCGGGCAGGGCGTGCCGTTGATGTAGCCGCGGCTGCGGCCTTCGGCGGTGATCACCCGGCGCAAGATGCACAGGCCTTCGTTGTCCAGGTCGCGCTCGGCCAGCCAGGTGTGCGCTT  <  1:467867/226‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GCTATATGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGGGAGCCGACCCCATGCTGGTGCACCTGTCCATTCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5378279‑5378518 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgccggcaTACTCGTCAAGCAGGCGACGGTGGGTGTCGGTCTTGAGCAGGGACTGGTGCTCGTGCTGGCTGTGGATATCGATCAGCAGTTCGCCCAGCGCCTTGAGGTCGCCGAGCGGGCAGGGCGTGCCGTTGATGTAGCCGCGGCTGCGGCCTTCGGCGGTGATCACCCGGCGCAAGATGCACAGGCCTTCGTTGTCCAGGTCGCGCTCGGCCAGCCAGGTGTGCGCTT  <  AE015451/5378861‑5378639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.