New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5405602 =	68 (0.950)	7 (0.100)	7/342	NT	8.7%	coding (368/660 nt)	PP_4749	Amino acid ABC transporter, permease protein
	?	AE015451	5405634 =	80 (1.150)					coding (336/660 nt)	PP_4749	Amino acid ABC transporter, permease protein

GTTTCGTCGCCGAGCCGCTGGTTGCGTTACCCCTCCCTGGTGGTGGTGGAACTGGGGCGTGGCGCACCGGCGTTGATCCTGCTGCAGTATTTCTACTTTGGCCTGCCCAGCGTCAACCTCACCCTGACCTCGTTCTGGGCTGCTGCGCTGGCCATGGCGTACTGCACGGCCGCCTACACCAGTGAAATCATTCGCGGTGGCATCGAGTCGGTGGCCGCGGGGCAAACCGAGGCCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5405840‑5405602 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgaCTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGA  >  AE015451/5405634‑5405722                                                                                                                                                                                                                                                                                                                                          GTTTCGTCGCCGAGCCGCTGGTTGCGTTACCCCTCCCTGGTGGTGGTGGAACTGGGGCGTGGCGCACCGGCGTTGATCCTGCTGCAGTATTTCTACTTTGGCCTGCCCAGCGTCAACCTCACCCTGACCTCGTTCTGGGCTGCTGCGCTGGCCATGGCGTACTGCACGGCCGCCTACACCAGTGAAATCATTCGCGGTGGCATCGAGTCGGTGGCCGCGGGGCAAACCGAGGCCGC                                                                                              >  1:864093/1‑236                                                               CGCACCGGCGTTGATCCTGCTGCAGTATTTCTACTTTGGCCTGCCCAGCGTCAACCTCACCCTGACCTCGTTCTGGGCTGCTGCGCTGGCCATGGCGTACTGCACGGCCGCCTACACCAGTGAAATCATTCGCGGTGGCATCGAGTCGGTGGCCGCGGGGCAAACCGAGGCCGCCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGC                                        >  1:893620/1‑228                                                                                                                                       CTGGGCTGCTGCGCTGGCCATGGGGTACTGCGCGGCCGCCTACACCAGTGAAATCATTCGCGGTGGCATCGAGTCGGTGGCCGCGGGGCAAACCGAGGCCACCGACTCGATGCCA                                                                                 >  2:1182696/1‑115                                                                                                                                       CTGGGCTGCTGCGCTGGCCATGGCGTACTGCACGGCCGCCTACACCAGTGAAATCATTCGCGGTGGCATCGAGTCGGTGGCCGCGGGGCAAACCGAGGCCACCGACTCGATGCCA                                                                                 <  1:1182701/115‑1                                                                                                                                        TGGGCTGCTGCGCTGGCCATGGCGTACTGCACGGCCGCCTACACCAGTGAAATCATTCGGGGTGGCATCGAGTCGGTGGCCGCGGGGCAAACCGAGGCCGCCGACTCGATGCCACCGCGAAT                                                                         <  2:1263548/122‑1                                                                                                                                        TGGGCTGCTGCGCTGGCCATGGCGTACTGCACGGCCGCCTACACCAGTGAAATCATTCGCGGTGGCATCGAGTCGGTGGCCGCGGGGCAAACCGAGGCCGCCGACTCGATGCCACCGCGAAT                                                                         >  1:1263553/1‑122                                                                                                                                               CTGCGCTGGCCATGGCGTACTGCACGGCCGCCTACACCAGTGAAATCATTCGCGGTGGCATCGAGTCGGTGGCCGCGGGGCAAACCGAGGCCGCCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGA  <  2:893615/186‑1                                                                                                                                                                     CACGGCCGCCTACACCAGTGAAATCATTCGCGGTGGCATCGAGTCGGTGGCCGCGGGGCAAACCGAGGCCGCCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAG                  <  2:768723/148‑1                                                                                                                                                                                                                                                                                                                                          GTTTCGTCGCCGAGCCGCTGGTTGCGTTACCCCTCCCTGGTGGTGGTGGAACTGGGGCGTGGCGCACCGGCGTTGATCCTGCTGCAGTATTTCTACTTTGGCCTGCCCAGCGTCAACCTCACCCTGACCTCGTTCTGGGCTGCTGCGCTGGCCATGGCGTACTGCACGGCCGCCTACACCAGTGAAATCATTCGCGGTGGCATCGAGTCGGTGGCCGCGGGGCAAACCGAGGCCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5405840‑5405602 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgaCTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGA  >  AE015451/5405634‑5405722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.