New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5408009	56 (0.780)	4 (0.060)	4/334	NT	6.5%	coding (729/1308 nt)	PP_4752	putative Xaa‑Pro aminopeptidase
	?	AE015451	= 5408044	61 (0.900)					coding (694/1308 nt)	PP_4752	putative Xaa‑Pro aminopeptidase

GCTGCGAGGCGATGTCCAGCAAGTCGCGTTGGGCCATGGTCGGTGCCTTGCCGGGGCAGATGAAGCTGCGCGAGATGTCTGAAAGGTAACCGCCGGGCCCGACCATGTCGGTGTCGAAACAGACCATTTCACCGGCCTTGATGACCTTGTCGGTGGCGTCCTGAAACCACGGATTGGTGCGCGGCCCGGAGCTGAGCAGGCGGCTTTCGGCCCACTCTCCGCCGTGCGCGACGTTGGTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5407768‑5408009 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtgccgGGGGTTACTGAAAACCAGCTGTGGAGCATCATGCACGGCACCAACGTCG  <  AE015451/5408044‑5407996                                                                                                                                                                                                                                                                                                     GCTGCGAGGCGATGTCCAGCAAGTCGCGTTGGGCCATGGTCGGTGCCTTGCCGGGGCAGATGAAGCTGCGCGAGATGTCTGAAAGGTAACCGCCGGGCCCGACCATGTCGGTGTCGAAACAGACCATTTCACCGGCCTTGATGACCTTGTCGGTGGCGTCCTGAAACCACGGATTGGTGCGCGGCCCGGAGCTGAGCAGGCGGCTTTCGGCCCACTCTCCGCCGTGCGCGACGTT                                                          <  1:783833/235‑1               TCCAGCAAGTCGCGTTGGGCCATGGTCGGTGCCTTGCCGGGGCAGATGAAGCTGCGCGAGATGTCTGAAAGGTAACCGCCGGGCCCGACCATGTCGGTGTCGAAACAGACCATTTCACCGGCCTTGATGACCTTGTCGGTGGCGTCCTGAAACCACGGATTGGTGCGCGGCCCGGAGCTGAGCAGGCGGCTTTCGGCCCACTCTCCGCCGTGCGCGACGTTG                                                         >  1:432180/1‑222                                                                              TCTGAAAGGTAACCGCCGGGCCCGACCATGTCGGTGTCGAAACAGACCATTTCACCGGCCTTGATGACCTTGTCGGTGGCGTCCTGAAACCACGGATTGGTGCGCGGCCCGGAGCTGAGCAGGCGGCTTTCGGCCCACTCTCCGCCGTGCGCGACGTTG                                                         <  2:1145418/159‑1                                                                                           CGCCGGGCCCGACCATGTCGGTGTCGAAACAGACCATTTCACCGGCCTTGATGACCTTGTCGGTGGCGTCCTGAAACCACGGATTGGTGCGCGGCCCGGAGCTGAGCAGGCGGCTTTCGGCCCACTCTCCGCCGTGCGCGACGTTGGTGCCGGGGGTTACTGAAAACCAGCTGTGGAGCATCATGCACGGCA           >  1:626138/1‑192                                                                                           CGCCGGGCCCGACCATGTCGGTGTCGAAACAGACCATTTCACCGGCCTTGATGACCTTGTCGGTGGCGTCCTGAAACCACGGATTGGTGCGCGGCCCGGAGCTGAGCAGGCGGCTTTCGGCCCACTCTCCGCCGTGCGCGACGTTGGTGCCGGGGGTTACTGAAAACCAGCTGTGGAGCATCATGCACGGCA           <  2:626133/192‑1                                                                                           CGCCGGGCCCGACCATGTCGGTGTCGAAACAGACCATTTCACCGGCCTTGATGACCTTGTCGGTGGCGTCCTGAAACCACGGATTGGTGCGCGGCCCGGAGCTGAGCAGGCGGCTTTCGGCCCACTCTCCGCCGTGCGCGACGGTGGTG                                                      >  2:279048/1‑149                                                                                            GCCGGGCCCGACCATGTCCGTGTCGAAACAGACCATTTCACCGGCCTTGATGACCTTGTCGGTGGCGTCCTGAAACCACGGATTGGTGCGCGGCCCGGAGCTGAGCAGGCGGCTTTCGGCCCACTCTCCGCCGTGCGCGACGTTGGTGCCGGGGGTTACTGAAAACCAGCTGTGGAGCATCATGCACGGCACCAACGTCG  <  2:859080/200‑1                                                                                                                                                                                            GGAGCTGAGCAGGCGGCTTTCGGCCCACTCTCCGCCGTGCGCGACGGTGGGGGCGGGGGGTACTGGAAACCAGCCGTGGAGCCTCATGCACGG             >  1:233273/1‑93                                                                                                                                                                                                                                                                                                     GCTGCGAGGCGATGTCCAGCAAGTCGCGTTGGGCCATGGTCGGTGCCTTGCCGGGGCAGATGAAGCTGCGCGAGATGTCTGAAAGGTAACCGCCGGGCCCGACCATGTCGGTGTCGAAACAGACCATTTCACCGGCCTTGATGACCTTGTCGGTGGCGTCCTGAAACCACGGATTGGTGCGCGGCCCGGAGCTGAGCAGGCGGCTTTCGGCCCACTCTCCGCCGTGCGCGACGTTGGTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5407768‑5408009 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtgccgGGGGTTACTGAAAACCAGCTGTGGAGCATCATGCACGGCACCAACGTCG  <  AE015451/5408044‑5407996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.