New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5840614	94 (1.320)	4 (0.060)	4/336	NT	4.1%	intergenic (‑34/+2)	sseA/PP_5119	putative 3‑mercaptopyruvate sulfurtransferase/Transcriptional regulator, TetR family
	?	AE015451	= 5840623	98 (1.430)					coding (659/666 nt)	PP_5119	Transcriptional regulator, TetR family
Rejected: Frequency below/above cutoff threshold.

GCCCGGTGCGCCCCTTGCTCACCGGACCGCTGAGATCCCGGTCCAGGTCGGCAAAATGCGCCCCCTCAATATGCCCCAGGGCATAGCTGCGCTGGCCATAGTCCACATCCTCGAGGGCAAAGCGGCAGTCGAGGATCACCAACTTGGGCGAGCCCAGACGCTCGGCCAACTGCTGCGGGGTGATCAATTGCGCAAGGGGCATGACAATCTCCTGATCGATGGCACAAGAGCCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5840379‑5840614 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctggAGCTCTAGCCCAGGGCTCTTGTGCCATCGATCAGGAGATTGTCATGCCCCTTGCGCAATTGATCACCCCGCAGCAGTTGGCCGAGCGTCTGGGCTCGCCCAAGTTGGTGATCCTCGACTGCCGCTTTGCCCTCGAGGATGTGGACTATGGCCAGCGCAGCTATGCCCTGGGG  <  AE015451/5840623‑5840452                                                                                                                                                                                                                                                                                                                                                                                                                          GCCCGGTGCGCCCCTTGCTCACCGGACCGCTGAGATCCCGGTCCAGGTCGGCAAAATGCGCCCCCTCAATATGCCCCAGGGCATAGCTGCGCTGGCCATAGTCCACATCCTCGAGGGCAAAGCGGCAGTCGAGGATCACCAACTTGGGCGAGCCCAGACGCTCGGCCAACTGCTGCGGGGTGATCAATTGCGCAAGGGGCATGACAATCTCCTGATCGATGGCACACGAGCCCTGG                                                                                                                                                                              >  1:165860/1‑236  CCCGGTGCGCCCCTTGCTCACCGGACCGCTGAGATCCCGGTCCAGGTCGGCAAAATGCGCCCCCTCAATATGCCCCAGGGCATAGCTGCGCTGGCCATAGTCCACATCCTCGAGGGCAAAGCGGCAGTCGAGGATCACCAACTTGGGCGAGCCCAGACGCTCGGCCAACTGCTGCGGGGTGATCAATTGCGCAAGGGGCATGACAATCTCCTGATCGATGGCACAAGAGCCCTGG                                                                                                                                                                              >  1:38057/1‑235                             GCTGAGATCCCGGTCCAGGTCGGCAAAATGCGCCCCCTCAATATGCCCCAGGGCATAGCTGCGCTGGCCATAGTCCACATCCTCGAGGGCAAAGCGGCAGTCGAGGATCACCAACTTGGGCGAGCCCAGACGCTCGGCCAACTGCTGCGGGGTGATCAATTGCGCAAGGGGCATGACAATCTCCTGATCGATGGCACAAGAGCCCT                                                                                                                                                                                >  1:303598/1‑206                                                                                                                                                                                          AATTGCGCAAGGGGCATGACAATCTCCTGATCGATGGCACAAGAGCCCTGGAGCTCTAGCCCAGGGCTCTTGTGCCATCGATCAGGAGATTGTCATGCCCCTTGCGCAATTGATCACCCCGCAGCAGTTGGCCGCGCGTCTGGGCTCGCCCAGGTTGGTGATCCTCGGCTGCCGCTTTGCC                                            >  1:627803/1‑181                                                                                                                                                                                                  AAGGGGCATGACAATCTCCTGATCGATGGCACAAGAGCCCTGGAGCTCTAGCCCAGGGCTCTTGTGCCATCGATCAGGAGATTGTCATGCCCCTTGCGCAATTGATCACCCCGCAGCAGTTGGCCGAGCGTCTGGGCTC                                                                              >  1:166925/1‑139                                                                                                                                                                                                  AAGGGGCATGACAATCTCCTGATCGATGGCACAAGAGCCCTGGAGCTCTAGCCCAGGGCTCTTGTGCCATCGATCAGGAGATTGTCATGCCCCTTGCGCAATTGATCACCCCGCAGCAGTTGGCCGAGCGTCTGGGCTC                                                                              <  2:166922/139‑1                                                                                                                                                                                                                   CCTGATCGATGGCACAAGAGCACTGGAGCTCTAGCCCAGGGCTCTTGTGCCATCGATCAGGAGATTGTCATGCCCCTTGCGCAATTGATCACCCCGCAGCAGTTGGCCGAGCGTCTGGGCTCGCCCAAGTTGGTGATCCTCGACTGCCGCTTTGCCCTCGgc                                      >  2:602021/1‑160                                                                                                                                                                                                                                       CCCTGGAGCTCTAGCCCAGGGCTCTTGTGCCATCGATCAGGAGATTGTCATGCCCCTTGCGCAATTGATCACCCCGCAGCAGTTGGCCGAGCGTCTGGGCTCGCCCTAGTTGGTGATCCTCGACTGCCGCT                                                 >  2:1180680/1‑131                                                                                                                                                                                                                                          TGGAGCTCTAGCCCAGGGCTCTTGTGCCATCGATCAGGAGATTGTCATGCCCCTTGCGCAATTGATCACCCCGCAGCAGTTGGCCGAGCGTCTGGGCTCGCCCAAGTTGGTGATCCTCGACTGCCGCTTTGCCCTCGAGGATGTGGACTATGGCCAGCGCAGCTATGCCCTGGGG  >  1:567549/1‑175                                                                                                                                                                                                                                                                                                                                                                                                                          GCCCGGTGCGCCCCTTGCTCACCGGACCGCTGAGATCCCGGTCCAGGTCGGCAAAATGCGCCCCCTCAATATGCCCCAGGGCATAGCTGCGCTGGCCATAGTCCACATCCTCGAGGGCAAAGCGGCAGTCGAGGATCACCAACTTGGGCGAGCCCAGACGCTCGGCCAACTGCTGCGGGGTGATCAATTGCGCAAGGGGCATGACAATCTCCTGATCGATGGCACAAGAGCCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5840379‑5840614 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctggAGCTCTAGCCCAGGGCTCTTGTGCCATCGATCAGGAGATTGTCATGCCCCTTGCGCAATTGATCACCCCGCAGCAGTTGGCCGAGCGTCTGGGCTCGCCCAAGTTGGTGATCCTCGACTGCCGCTTTGCCCTCGAGGATGTGGACTATGGCCAGCGCAGCTATGCCCTGGGG  <  AE015451/5840623‑5840452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.