| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | AE015451 | 197,869 | T→C | 8.1% | G1125G (GGT→GGC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451 | 197,869 | 0 | T | C | 8.1% | 242.8 / 3.8 | 80 | G1125G (GGT→GGC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (44/28); new base C (5/2); total (50/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.03e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.98e-01 | |||||||||||
CCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCAATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAA > AE015451/197643‑198101 | ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAAcccc > 1:1120452/1‑234 (MQ=255) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCg > 1:933193/1‑235 (MQ=255) acaGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAAc > 2:534586/1‑218 (MQ=255) tttCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCgg > 1:1130527/1‑236 (MQ=255) ttCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCCACGGCCAAACCATTCCCGTTGAAGCGGGGaaaca > 1:1638/1‑204 (MQ=255) gAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTacaaca > 1:1234678/1‑236 (MQ=255) gCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCa > 2:1112596/1‑212 (MQ=255) cACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGt > 1:1041486/1‑207 (MQ=255) tCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGA‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAAAAACGGCTc > 1:30757/1‑216 (MQ=255) aCTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCgagaa > 1:1207966/1‑234 (MQ=11) gACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCCGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCgaga > 1:63679/1‑226 (MQ=255) caccacTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCa < 2:604463/209‑1 (MQ=255) cTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCAc > 1:194919/1‑200 (MQ=255) cTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATCACCGTTGAAGCCGGCACAACCCAGGGCAGCGt > 2:852011/1‑143 (MQ=11) aCCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGCCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGa > 1:162117/1‑235 (MQ=255) cGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCt > 2:988794/1‑162 (MQ=255) aaGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCATACGCCGGTAACCGTGACCTTGGCCAACGGCCAAATCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCa > 2:691167/1‑179 (MQ=255) aGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGa < 1:534591/236‑1 (MQ=255) cggcgTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGa < 2:1130522/233‑1 (MQ=255) cgTCATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCa < 1:806598/131‑1 (MQ=38) gTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGt > 2:499242/1‑158 (MQ=255) tGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCgcacgt > 1:170125/1‑152 (MQ=255) gATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTTACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAggg > 1:171407/1‑102 (MQ=255) gATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGt > 2:390526/1‑162 (MQ=40) aCCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAAt < 1:82740/126‑1 (MQ=38) tGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCAACGa > 1:267740/1‑235 (MQ=255) gACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGCAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGa > 2:723782/1‑234 (MQ=255) gACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACCTCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGAt > 1:112317/1‑235 (MQ=255) gccaggAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGa < 2:817956/98‑1 (MQ=255) cccTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGc < 1:1124983/89‑1 (MQ=255) cccTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACgccca > 2:871326/1‑117 (MQ=255) cccTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGAc > 2:193137/1‑136 (MQ=40) cccTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATc > 2:907390/1‑152 (MQ=38) cccTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCCGCCTc > 1:277416/1‑208 (MQ=255) cccTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGCCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGa > 2:1035832/1‑186 (MQ=255) cccTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGc > 2:1124978/1‑89 (MQ=25) cTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGa > 2:930166/1‑221 (MQ=255) agacaaaTCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATAcc < 1:906492/228‑1 (MQ=255) gCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAg > 1:614538/1‑198 (MQ=255) aaTCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGaa > 2:587208/1‑171 (MQ=39) aaTCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGa < 2:376137/184‑1 (MQ=255) aaTCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGa > 1:376142/1‑184 (MQ=255) aaTCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATACCGt > 2:622103/1‑230 (MQ=255) cccgCCCAGACGCCGGTAGCCGTGGCCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAg < 2:277412/190‑1 (MQ=255) cTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGa < 1:764709/174‑1 (MQ=39) tGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCCCCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTc > 1:290240/1‑176 (MQ=255) gACGCCGGTAACCGTGACCTTGTCCAACGGCATAACCATGACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACTCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTAtt < 2:720687/232‑1 (MQ=255) aCGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGt < 2:614533/233‑1 (MQ=255) gCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCAAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATACCGTCa < 1:647895/218‑1 (MQ=255) ccGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATTGAGAGCGCCACGGGCGGCAACTTCGa > 1:411017/1‑155 (MQ=38) ccGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGccc > 2:906487/1‑183 (MQ=255) ccGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACGTCgcc > 2:942966/1‑154 (MQ=255) ccGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGCCGATTTCCATACCCCGGCCAATGACGTCTACAACAACGGCGCGACCCTCAGCGTCCCCATcc > 2:52975/1‑129 (MQ=11) ccctGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAgcaatggc < 2:684126/224‑1 (MQ=255) ccctGTCCAACGGCCAAACCATTACCGTTGAAGCGGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCAc > 2:489059/4‑127 (MQ=2) ttGTCCAACGGCAAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTAtt < 1:380974/213‑1 (MQ=255) ctGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCAACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATAcc < 1:700803/197‑1 (MQ=255) gTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCTTCGATACCGTCACCGTAAGTATTGTCAGCAATGGCAATGTGACCGAAg < 1:723787/236‑1 (MQ=255) gTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCa < 1:143771/215‑1 (MQ=255) ccAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATg < 2:1254664/72‑1 (MQ=34) ccAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATg > 1:1254669/1‑72 (MQ=35) cAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATAcc > 2:906001/1‑193 (MQ=255) cAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATAcc < 1:906006/193‑1 (MQ=255) aaCGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTCCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCAc > 2:510784/1‑104 (MQ=17) aCGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCAATGGCAATGTGACCGAAGACcag < 1:930171/236‑1 (MQ=255) aCGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCAATGGCAATGTGACCGAAGACcag < 1:1112601/236‑1 (MQ=255) gCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGGCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAccccc > 2:162342/1‑158 (MQ=255) ccAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAACGACGTCTACAACAACGGCTCGACCGTCCGCCTCACCATCCAGAGCGccccc > 2:190716/1‑112 (MQ=11) ccATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCg > 1:485116/1‑177 (MQ=255) ttgccGTTGAAGCGGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAAt < 1:1097988/161‑1 (MQ=255) tgTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGt > 2:974553/2‑187 (MQ=255) cGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCg > 2:631223/1‑148 (MQ=255) cGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATAc < 2:162114/174‑1 (MQ=255) cGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATACCGt > 1:1075608/1‑177 (MQ=255) cGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCAATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTAc < 1:323209/234‑1 (MQ=255) gTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATACCGTCACCGCAAGTATTGTCAGCAATGGCAATGTGACCGAAGa < 2:485111/215‑1 (MQ=255) tGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATa < 2:1041481/170‑1 (MQ=255) aaGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGGCTCGACTGTCATCAATGACAGCATCGATACCGTCACCGt > 2:954955/1‑178 (MQ=255) cggTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCAATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTaa < 1:974558/235‑1 (MQ=255) ggTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCAATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTaa < 1:622108/235‑1 (MQ=255) tAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCAATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTaa < 1:613249/233‑1 (MQ=255) | CCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACGGGCGGCAACTTCGAACATCTGACTCCGAATCCGACCCCAGCCTCGACTGTCATCAATGACAGCATCGATACCGTCACCGTAAGTATTGTCAGCAATGGCAATGTGACCGAAGACCAGCAGCCTTCCTTTACTGTGAAAGTAA > AE015451/197643‑198101 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |