| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | AE015451 | 199,120 | T→C | 7.8% | D1542D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451 | 199,120 | 0 | T | C | 7.8% | 208.1 / 3.1 | 73 | D1542D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (33/33); new base C (4/2); total (38/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01 | |||||||||||
GCATCAACTCGGCGGTGGACGCCACTGGTGCTGCGTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCAC > AE015451/198897‑199350 | gCATCAACTCGGCGGTGGACGCCACTGGTGCTGCGTTCGAGAACCTCGAGTTGGGCGGTGCCGCGACAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACCCCGTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGACGGCACCACTgt > 1:872913/1‑235 (MQ=255) tCAACTCGGCGGTGGACGCCACTGGTGCTGCGTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGGCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTgtcgtc > 1:210256/1‑236 (MQ=255) tCGGCGGTGGACGCCACTGGTGCTGCGTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGc > 1:904156/1‑236 (MQ=255) cggTGGACGCCACTGGTGCTGCGTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGcc < 1:565750/236‑1 (MQ=255) cggTGGACGCCACTGGTGCTGCGTTCGAGAACCTCGAGCTGGGCGGTGCCGCGTCAGTGGAAGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCTTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGACGGCACCACTGTCGTCGTGGCAGc > 1:1274303/1‑235 (MQ=11) ggTGGACGCCACTGGTGCTGCGTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCa > 1:1073470/1‑236 (MQ=255) ggACGCCACTGGTGCTGCGTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACAGCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCaa < 2:869386/234‑1 (MQ=255) gTGCTGCGTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGt < 1:436480/236‑1 (MQ=255) cGTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACTAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACGGc > 2:1185601/1‑221 (MQ=255) ttCGAGAACCTCGAGTTGGGCGGTGCCGCGAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGc < 2:1073465/233‑1 (MQ=255) ttCGAGAACCTCGAGTTGGGCGGTGCCGCGAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGc > 2:896895/1‑233 (MQ=255) ttCGAGAACCTCGAGTTGGGCGGTGCCGCGAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCa > 1:288735/1‑235 (MQ=255) ttCGAGAACCTCGAGTTGGGCGGTGCCGCGAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCAc > 1:355778/1‑236 (MQ=255) gagaACCTCGAGTTGGGCGGTGCCGCGAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGcc > 1:60391/1‑231 (MQ=255) gAGTTGGGCGGTGCCGCGAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTc < 2:586680/218‑1 (MQ=255) gTTGGGCGGTGCCGCGAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGt < 2:553175/225‑1 (MQ=255) gTTGGGCGGTGCCGCGAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGcccc > 2:1264720/1‑234 (MQ=255) gTTGGGCGGTGCCGCGAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGcccc < 1:321473/234‑1 (MQ=255) gTTGGGCGGTGCCGCGAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCg > 1:622292/1‑235 (MQ=255) gTTGGGCGGTGCCGCGAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCg < 1:490661/235‑1 (MQ=255) tGCCGCGAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCt < 1:1246759/236‑1 (MQ=255) ccGCGAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCt > 2:1115953/1‑234 (MQ=255) cgcgAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGAGGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCAc > 1:337776/1‑210 (MQ=255) cgAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAAc < 1:971906/227‑1 (MQ=255) cgAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTAt > 2:1072684/1‑233 (MQ=255) aGTGGATGTCACCGACCCCCTCGACGAGGTGGTCGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACCGTCGTCGTGGCa < 1:1012047/178‑1 (MQ=255) gATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAgccgcc > 1:495352/1‑210 (MQ=255) gTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCg > 2:695913/1‑226 (MQ=255) ccgcgacgaGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGca < 1:357926/167‑1 (MQ=255) gaGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCAt > 1:984795/1‑236 (MQ=255) gtggtgGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGcccc < 2:288731/188‑1 (MQ=40) tggtggCCAAACTGACTGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAgccg < 1:1126773/183‑1 (MQ=18) ccAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCggtg > 2:293918/1‑215 (MQ=39) ccAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCAt > 2:590382/1‑226 (MQ=40) cTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACGCACGGCACTACTCTCGTCGTGACAGCCAACAGCACCACCAGt > 2:634617/1‑156 (MQ=14) ccTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTCCCCCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCg < 2:354168/173‑1 (MQ=255) cACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATc < 2:807594/214‑1 (MQ=38) cACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGACGGCACTACTGTCGTCGTGGCAGc > 1:1154801/1‑132 (MQ=255) cACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGACGGCACCACTGTCGTCGTGGCAGc < 2:1154796/132‑1 (MQ=12) ccGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGc > 1:605505/1‑135 (MQ=34) ccGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGc < 2:605500/135‑1 (MQ=35) gTCGGTTACCGAAGGCGGTGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAgcggcg < 1:546481/224‑1 (MQ=11) ccGGTCACCGAAGCCGGCGAGATCACCTCCACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACGGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCacca < 2:397967/183‑1 (MQ=9) ggTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGt < 1:1156055/236‑1 (MQ=34) tCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAgcgg < 2:725041/217‑1 (MQ=33) aCCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGAc > 1:981833/1‑204 (MQ=33) aCCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGACGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGAc < 2:981828/204‑1 (MQ=17) agaTCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGCCTATGTCGGCACCAACCAGCCGGCGGTCAATGCCATCGACGCGGTCAGCGGCGCAGa > 1:179105/1‑208 (MQ=14) aTCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTgg < 1:36671/235‑1 (MQ=31) tCACCTCCACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAaacctgaacct < 2:451009/233‑1 (MQ=14) ccTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAg < 1:590387/236‑1 (MQ=31) acCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGAcccc < 1:1026273/236‑1 (MQ=31) ccATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCTATGGCACTACTGTCGTCGTTGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGACGCAGATGCATGGAAGTTCGAAAAGCTGAACCTGGACAAGAcccc < 2:678396/235‑1 (MQ=9) aTCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGc > 2:1028883/1‑157 (MQ=31) aTCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGc < 1:1028888/157‑1 (MQ=31) aTCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGt > 2:1056977/1‑182 (MQ=31) tCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTc < 1:1264725/236‑1 (MQ=31) cGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCa > 2:448180/1‑188 (MQ=31) cGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAg > 1:228320/1‑235 (MQ=11) gCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGaa > 2:577881/1‑198 (MQ=11) gATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCa < 1:1115958/236‑1 (MQ=11) cAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTc > 1:407694/1‑236 (MQ=32) aaCCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAg > 1:1033157/1‑235 (MQ=32) tCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCaa < 2:1152219/233‑1 (MQ=33) ggAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCa < 1:695918/221‑1 (MQ=11) aGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCa < 2:1104451/228‑1 (MQ=33) aGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAg > 2:443577/1‑234 (MQ=32) aCTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGa > 1:410941/1‑232 (MQ=32) ttC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGt > 1:1273833/1‑236 (MQ=33) c‑AAGATGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTc < 1:1037884/235‑1 (MQ=18) gCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCCGGCACTCCAGGCAACGAAGGCGACATCGTCAAg > 1:418290/1‑235 (MQ=18) gCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAg > 1:785937/1‑235 (MQ=33) ccGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCAc > 1:557116/1‑235 (MQ=33) | GCATCAACTCGGCGGTGGACGCCACTGGTGCTGCGTTCGAGAACCTCGAGTTGGGCGGTGCCGCGAAAGTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTC‑AAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCAC > AE015451/198897‑199350 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |