| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | AE015451 | 210,742 | C→T | 5.7% | A5416A (GCC→GCT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451 | 210,742 | 0 | C | T | 5.7% | 259.8 / 3.7 | 85 | A5416A (GCC→GCT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (41/39); new base T (2/3); total (43/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACGTCGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCAC > AE015451/210508‑210966 | ggACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACGTCGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCg > 1:116466/1‑236 (MQ=40) gACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACGTCGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCgg > 1:408179/1‑236 (MQ=255) aaGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACGTCGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCga > 2:761285/1‑230 (MQ=40) gTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACGTCGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAgcg < 1:1271884/236‑1 (MQ=40) aaCTGACGCTGGACAAGACGCCGGTCAGCACGTCGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTa > 1:486649/1‑235 (MQ=255) aCGCTGGACAAGACGCCGGTCAGCACGTCGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACAccc < 1:921404/235‑1 (MQ=255) gACAAGACGCCGGTCAGCACGTCGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCt < 1:605252/234‑1 (MQ=40) aCAAAACCCCGGTCAGCACGTCGGTCACCGACGAGCCGGGTACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCa < 1:1177663/213‑1 (MQ=18) aGACGCCGGTCAGCACGTCGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAg > 1:662859/1‑236 (MQ=40) gCCGGTCAGCACGTCGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGACCTGGACAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGTCCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGc < 1:798344/235‑1 (MQ=37) tCAGCACGTCGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTgcgcctgtctcttat > 1:910114/1‑225 (MQ=255) cACGTCGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTa < 2:910109/207‑1 (MQ=38) tCGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGACCTGGTCCAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCg < 2:773314/223‑1 (MQ=37) cGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGAt < 2:1096868/224‑1 (MQ=25) gTCACCGACGAGCCAGGTACCCCAGGCAACGACGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCa < 2:68663/190‑1 (MQ=37) cACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGacg > 1:354491/1‑234 (MQ=18) aCCGACGAGCCAGGTACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGc < 1:488638/236‑1 (MQ=37) gCCAGGTACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGc < 1:741770/208‑1 (MQ=35) ccccAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGc > 2:819390/1‑233 (MQ=35) cccGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGc < 2:739483/199‑1 (MQ=17) cAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTa < 1:364852/208‑1 (MQ=33) ggCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTgcgc > 2:741765/1‑190 (MQ=33) aCGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCTGGCGAGACCAGCGCGCCGTACACCCACGCTg > 2:345928/1‑183 (MQ=18) cGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACt < 1:189129/236‑1 (MQ=33) gAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTTCACGTCAACCAGCCGCAGGCTCACGCCCTGGTCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCgg > 1:401101/1‑168 (MQ=255) aGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACt > 1:230569/1‑236 (MQ=33) gTCCCCATCCCCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCa < 2:291862/142‑1 (MQ=17) ccATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGt < 2:686805/220‑1 (MQ=12) tCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGt > 2:612169/1‑217 (MQ=34) tCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGAc > 1:1004603/1‑235 (MQ=38) cTTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGc < 2:506561/208‑1 (MQ=14) agaACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCaa > 1:430622/1‑235 (MQ=38) agaACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCaa > 1:108139/1‑235 (MQ=38) aaCGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCtt < 1:122291/209‑1 (MQ=38) aaCCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTgcg > 1:412929/1‑122 (MQ=32) tCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGAcc > 2:1060511/1‑191 (MQ=37) cACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCCCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCaa > 2:799541/1‑229 (MQ=39) tGTTCACGTCACCCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCGAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATc < 2:213951/145‑1 (MQ=17) cGTCAACCAGCCGCAGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTa < 2:275369/120‑1 (MQ=17) gTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCAt < 2:389842/149‑1 (MQ=34) gTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCtt > 1:405919/1‑182 (MQ=37) gTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCt < 2:409577/181‑1 (MQ=37) cAACCAGCCGCTGGCCCACGACCTGGGCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCaa < 1:293690/217‑1 (MQ=255) accccgCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCg < 2:349498/176‑1 (MQ=37) aaCCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACAccc > 1:906142/1‑91 (MQ=34) aaCCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACg > 2:1129820/1‑121 (MQ=18) aaCCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGtc > 2:404946/1‑158 (MQ=18) aaCCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGGTTACAACGATGCTGGCCAGATCAGCCTggg > 1:528677/1‑143 (MQ=17) aGCCGCGGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAgtg < 1:437543/236‑1 (MQ=38) gCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCAc > 1:823504/1‑88 (MQ=35) gCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCAc < 2:823499/88‑1 (MQ=33) gCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAgtgg > 1:1137806/1‑236 (MQ=39) gCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACAccc < 2:546664/86‑1 (MQ=18) gCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGGCCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGacac < 1:130159/219‑1 (MQ=39) cTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGACGCTGGcc > 1:1186602/1‑121 (MQ=9) ggCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGcc < 1:201957/235‑1 (MQ=38) ggCTCACGACCTGGTCGTGACCATGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCa < 1:621914/236‑1 (MQ=38) gCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCaa < 1:810624/236‑1 (MQ=255) gACCTGGTCGTGACCCTGAGCAACACTGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCtt < 1:393592/161‑1 (MQ=38) tCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACAccc > 2:719343/1‑66 (MQ=37) tCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGATGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGc < 2:1203864/139‑1 (MQ=25) tCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGATGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGc > 1:1203869/1‑139 (MQ=21) gTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGAccc > 1:1229114/1‑235 (MQ=255) gTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAgtggt < 1:1052704/215‑1 (MQ=12) cccTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCCGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGggcgg < 1:587363/169‑1 (MQ=255) cTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGAt > 1:442851/1‑75 (MQ=34) cTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCgg > 1:631102/1‑235 (MQ=40) cTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTCCAACTGGGCGGCac > 2:922035/1‑169 (MQ=255) aGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGcc < 1:744860/210‑1 (MQ=40) gCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGggc > 1:381688/1‑161 (MQ=40) gCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACGCCTTCGGTGAcc > 1:764621/1‑236 (MQ=255) gCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTCTACAACGATGCTGGCCa < 2:818335/94‑1 (MQ=18) caacaaTGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCGGTCACCg > 1:816650/1‑236 (MQ=255) caacaaTGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGGGGCCAAGCTGACTGCGACCCCGTCGGTCAcc > 1:259710/1‑235 (MQ=255) accaaCGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTg < 1:1022866/128‑1 (MQ=25) aacaaTGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCtcgagct > 1:1109440/1‑149 (MQ=255) tGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCGGTCACCGAAggcg < 1:899614/236‑1 (MQ=39) ccAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCGGTCACCGAAggcggc < 1:1060516/235‑1 (MQ=38) aGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACGGGGCGGCAACGCTTCg > 1:312893/1‑161 (MQ=255) aGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGCGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTg > 2:96396/1‑92 (MQ=18) aCCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCAc < 1:593114/236‑1 (MQ=40) aCCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGGGCGAccc > 2:202420/1‑123 (MQ=255) aTCAAGGCCGGCGAGACCAGCGCGCTGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGCTCAGCCTGTGCATCAACTCGGCGGTAGACGCCACTGGTCCGCCCTTccc > 2:373706/1‑123 (MQ=11) aTCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGGTCACGTGACCGaccc > 2:55700/1‑168 (MQ=255) cAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCg < 2:408174/205‑1 (MQ=40) ccGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAgtg > 2:758323/1‑176 (MQ=40) ccGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCGGTCACCGAAGGCGGCgag > 1:374965/1‑221 (MQ=39) | GGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACGTCGGTCACCGACGAGCCAGGTACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCAC > AE015451/210508‑210966 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |