New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | = 576122 | 44 (1.080) | 4 (0.110) | 4/300 | NT | 9.6% | coding (1159/3069 nt) | fdoG | formate dehydrogenase‑O major subunit |
? | AE015451 | = 576104 | 36 (0.990) | coding (1141/3069 nt) | fdoG | formate dehydrogenase‑O major subunit |
GCGCAACTACACTGACGTGTCGTTCATCGTCAAAGAGAACTATGGCTTCGAGGATGGCCTGTTCAGCGGCTACGACGAGGCCAAGCGTGTGTACGCCGACAAGTCCGGCTGGGGTTACGAGCTGGGTGAGGACGGCTATGCCAAGGTCGACCCGACACTGCAGCACCCTCGCTGCGTGTTCCAGCTGATGAAGCAGCATTACAGCCGCTATACCCCGGAACTGGCGAGCATGACCTGTGGCATGCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/575872‑576122 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtggcatgccacaggTCATGCTCGCCAGTTCCGGGGTATAGCGGCTGTAATGCTGCTTCATCAGCTGGAACACGCAGCGAGGGTGCTGCAGTGTCGGGTCGACCTTGGCATAGCCGTCCTCACCCAGCTCGTAACCCCAGCCGGACTTGTCGGCGTACACACGCTTGGCCTCGTCGTAGCCGCTGAACAGGCCATCCTCGAAGCCATAGTTCTCTTTGACGATGAACGACACGTCAGT < AE015451/576104‑575882 agacagCTACACTGACGTGTCGTTCATCGTCAAAGAGAACTATGGCTTCGAGGATGGCCTGTTCAGCGGCTACGACGAGGCCAAGCGTGTGTACGCCGACAAGTCCGGCTGGGGTTACGAGCTGGGTGAGGACGGCTATGCCAAGGTCGACCCGACACTGCAGCACCCTCGCTGCGTGTTCCAGCTGATGAAGCAGCATTACAGCCGCTATACCCCGGAACTGGCGAGCATGACCT < 1:189119/230‑1 CAAGGTCGACCCGACACTGCAGCACCCTCGCTGCGTGTTCCAGCTGATGAAGCAGCATTACAGCCGCTATACCCCGGAACTGGCGAGCATGCCCCGTGGCGTGCCACAGGTCATGCCCGCCAGTTCCGGGGTATAGCGGCTGGAATGCTGGTTCATCAGgt > 1:85009/1‑159 CACCCTCGCTGCGTGTTCCAGCTGATGAAGCAGCATTACAGCCGCTATACCCCGGAACTGGCGAGCATGACCTGTGGCATGCCACAGGTCATGCTCGCCAGTTCCGGGGTATAGCGGCTGTAATGCTGCTTCATCAGCTG > 1:426202/1‑140 ATGAAGCAGCATTACAGCCGCTATACCCCGGAACTGGCGAGCATGACCTGTGGCATGCCACAGGTCATGCTCGCCAGTTCCGGGGTATAGCGGCTGTAATGCTGCTTCATCAGCTGGAACACGCAGCGAGGGTGCTGCAGTGTCGGGTCGACCTTGGCATAGCCGTCCTCACCCAGCTCGTAACCCCAGCCGGACTTGTCGGCGTACCCACGCTTGGCC > 1:714390/1‑219 ATACCCCGGAACTGGCGAGCATGACCTGTGGCATGCCACCGGTCATGCTCGCCAGTTCCGGGGTATAGCGGCTGTAATGCTGCTTCATCAGCTGGAACACCCAGCGGGGGg > 2:145509/1‑110 CATGCCACAGGTCATGCTCGCCAGTTCCGGGGTATAGCGGCTGTAATGCTGCTTCATCAGCTGGAACACGCAGCGAGGGTGCTGCAGTGTCGGGTCGACCTTGGCATAGCCGTCCTCACCCAGCTCGTAACCCCAGCCGGACTTGTCGGCGTACACACGCTTGGCCTCGTCGTAGCCGCTGAACAGGCCATCCTCGAAGCCATAGTTCTCTTTGACGATGAACGACACGTCAGT > 2:686828/1‑234 GCGCAACTACACTGACGTGTCGTTCATCGTCAAAGAGAACTATGGCTTCGAGGATGGCCTGTTCAGCGGCTACGACGAGGCCAAGCGTGTGTACGCCGACAAGTCCGGCTGGGGTTACGAGCTGGGTGAGGACGGCTATGCCAAGGTCGACCCGACACTGCAGCACCCTCGCTGCGTGTTCCAGCTGATGAAGCAGCATTACAGCCGCTATACCCCGGAACTGGCGAGCATGACCTGTGGCATGCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/575872‑576122 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtggcatgccacaggTCATGCTCGCCAGTTCCGGGGTATAGCGGCTGTAATGCTGCTTCATCAGCTGGAACACGCAGCGAGGGTGCTGCAGTGTCGGGTCGACCTTGGCATAGCCGTCCTCACCCAGCTCGTAACCCCAGCCGGACTTGTCGGCGTACACACGCTTGGCCTCGTCGTAGCCGCTGAACAGGCCATCCTCGAAGCCATAGTTCTCTTTGACGATGAACGACACGTCAGT < AE015451/576104‑575882 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |