| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 637118 | 40 (0.980) | 3 (0.080) | 3/318 | NT | 7.6% | coding (1342/1350 nt) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
| ? | AE015451 | = 637159 | 35 (0.900) | coding (37/630 nt) | PP_0548 | putative phenylacrylic acid decarboxylase, padA1 | |||||
GCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/636878‑637118‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgaggcgcCCGTCATGGCCAGGGTGATGCGTTCCGGCCCGTTCACTTCAGCGCCTCGGCCAGCTTGCCGTGCAGGCCGCCGAAGCCGCCGTTGCTCATGATCACCACCTGGGTGCCTGGGCGAGCCTGACCTTTGACCCGCTCGATGATCGCTTCGAGGCTATCGGCCACCACGCTCGGCACCTTGCACTGCGCAGCGGTGGCGGCCAGGTCCCAGCCGAGGTTGGCC < AE015451/637159‑636940 GCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCCGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCCCGGCAAGCTGGCCGc > 1:15229/1‑235GCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCC > 2:761479/1‑234 GACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGGCAGGCTCGCCCAGGCACCCAGGGGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCcg > 2:78461/1‑201 CGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCC < 2:207336/163‑1 ccgCCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCGCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAG < 2:166933/146‑1 CAAAGGTCAGGCTCGCCCAGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCCCGTCATGGCCAGGGTGATGCGTTCCGGCCCGTTCACTTCAGCGCCTCGG > 1:321912/1‑136 CAAAGGTCAGGCTCGCCCAGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCCCGTCATGGCCAGGGTGATGCGTTCCGGCCCGTTCACTTCAGCGCCTCGG < 2:321911/136‑1 GCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCCCGTCATGGCCAGGGTGATGCGTTCCGGCCCGTTCACTTCAGCGCCTCGGCCAGCTTGCCGTGCAGGCCGCCGAAGCCGCCGTTGCTC > 1:55482/1‑133 CGAGGCGCCCGTCATGGCCAGGGTGATGCGTTCCGGCCCGTTCACTTCAGCGCCTCGGCCAGCTTGCCGTGCAGGCCGCCGAAGCCGCCGTTGCTCATGATCACCACCTGGGTGCCTGGGCGAGCCTGACCTTTGACCCGCTCGATGATCGCTTCGAGGCTATCGGCCACCACGCTCGGCACCTTGCACTGCGCAGCGGTGGCGGCCAGGTCCCAGCCGAGGTTGGCC < 2:601078/228‑1 AGGCGCCCGTCATGGCCAGGGTGATGCGTTCCGGCCCGTTCACTTCAGCGCCTCGGCCAGCTTGCCGTGCAGGCCGCCGAAGCCGCCGTTGCTCATGATCACCACCTGGGTGCCTGGGCGAGCCTGACCTTTGACCCGCTCGATGATCGCTTCGAGGCTA > 2:301882/1‑160 CGCCCGTCATGGCCAGGGTGATGCGTTCCGGCCCGTTCACTTCAGCGCCTCGGCCAGCTTGCCGTGCAGGCCGCCGAAGCCGCCGTTGCTCATGATCACCACCTGGGTGCCTGGGCGAGCCTGACCTTTGACCCGCTCGATGATCGCTTCGAGGCTATCGGCCACCACGCTCGGCACCTTGCACTGCGCAGCGGTGGCGGCCAGGTCCCAG > 2:662930/1‑211 CCCGTCATGGCCAGGGGGATGCGTTCCGGCCCGTTCACTTCAGCGCCTCGGCCAGCTTGCCGTGCAGGCCGCCGAAGCCGCCGTTGCTCATGATCACCACCTGGGTGCCTGGGCGAGCCTGACCTTTGACCCGCTCGATGATCGCTTCGAGGCTATCGGCCACCACGCTCGGCACCTTGCACTGCGCAGCGGTGGCGGCCA < 2:546569/201‑1 GCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/636878‑637118‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgaggcgcCCGTCATGGCCAGGGTGATGCGTTCCGGCCCGTTCACTTCAGCGCCTCGGCCAGCTTGCCGTGCAGGCCGCCGAAGCCGCCGTTGCTCATGATCACCACCTGGGTGCCTGGGCGAGCCTGACCTTTGACCCGCTCGATGATCGCTTCGAGGCTATCGGCCACCACGCTCGGCACCTTGCACTGCGCAGCGGTGGCGGCCAGGTCCCAGCCGAGGTTGGCC < AE015451/637159‑636940 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |