New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1759389	50 (1.220)	3 (0.080)	3/328	NT	5.5%	coding (552/1296 nt)	PP_1565	Phage portal protein, HK97 family
	?	AE015451	= 1759410	55 (1.380)					coding (573/1296 nt)	PP_1565	Phage portal protein, HK97 family

CGCGGCGCCTGGCGGACGGCTCCATCGAGTACCGCTACACCGACAACTTCGGCAAGCCTCACACGCTGACCGAGGATCAGATGGTGCACGTGCGAGCCTTCGGCATGGACCCGCTTTGCGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1759265‑1759389 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgCCGCCCGTAGGCCAGCGGCGACAGGCCGCAAAGCGGGTCCATGCCGAAGGCTCGCACGTGCACCATCTGATCCTCGGTCAGCGTGTGAGGCTTGCCGAAGTTGTCGGTGTAGCGGTACTCGATGGAGCCGTCCGCCAGGCGCCGCGGCGGCGACATGTTCTGCGGCAG  <  AE015451/1759410‑1759243                                                                                                                                                                                                                                                                                                       CGCGGCGCCTGGCGGACGGCTCCATCGAGTACCGCTACACCGACAACTTCGGCAAGCCTCACACGCTGACCGAGGATCAGATGGTGCACGTGCGAGCCTTCGGCATGGACCCGCTTTGCGGCCT                                                                                                                                                                           >  1:607823/1‑124                                                            CACACGCTGACCGAGGATCAGATGGTGCACGTGCGAGCCTTCGGCATGGACCCGCTTTGCGGCCTGCCGCCCGTAGGCCAGCGGCGACAGGCCGCAAAGCGGGTCCATGCCGAAGGCTCGCACGTGCAC                                                                                                           >  2:607822/1‑129                                                                                GATGGTGCACGTGCGAGCCTTCGGCATGGACCCGCTTTGCGGCCTGCCGCCCGTAGGCCAGCGGCGACAGGCCGCAAAGCGGGTCCATGCCGAAGGCTCGCACGTGCACCATCTGATCGTCGGTCAGCGTGTGAGGCTTGCCGAAGTTGTCGGTGGAGCGGga                                                     >  1:169631/1‑161                                                                                              GAGCCTTCGGCATGGACCCGCTTCGCGGC                                                                                                                                                                             >  2:81381/1‑29                                                                                                  CTTCGGCATGGACCCGCTTTGCGGCCTGCCGCCCGTCGGCCAGCGGCGACAGGCCGCAAAGCGGGTCCATGCCGAAGGCTCGCACGTGCACCATCTGATCCTCCGTCAGCGT                                                                                      >  2:555112/1‑112                                                                                                                          CCTGCCGCCCGTAGGCCAGCGGCGACAGGCCGCAAAGCGGGTCCATGCCGAAGGCTCGCACGTGCACCATCTGATCCTCGGTCAGCGTGTGAGGCTTGCCGAAGTTGTCGGTGTAGCGGTACTCGATGGAGCCGTCCGCCAGGCGCCGCGGCGGCGACATGTTCTGCGGCAG  <  2:595166/172‑1                                                                                                                           CTGCCGCCCGTAGGCCAGCGGCGACAGGCCGCAAAGCGGGTCCATGCCGAAGGCTCGCACGTGCACCATCTGATCCTCGGTCAGCGTGTGAGGCTTGCCGAAGTTGTCGGTGTAGCGGTACTCGATGGA                                            <  2:549830/129‑1                                                                                                                                                                                                                                                                                                       CGCGGCGCCTGGCGGACGGCTCCATCGAGTACCGCTACACCGACAACTTCGGCAAGCCTCACACGCTGACCGAGGATCAGATGGTGCACGTGCGAGCCTTCGGCATGGACCCGCTTTGCGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1759265‑1759389 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgCCGCCCGTAGGCCAGCGGCGACAGGCCGCAAAGCGGGTCCATGCCGAAGGCTCGCACGTGCACCATCTGATCCTCGGTCAGCGTGTGAGGCTTGCCGAAGTTGTCGGTGTAGCGGTACTCGATGGAGCCGTCCGCCAGGCGCCGCGGCGGCGACATGTTCTGCGGCAG  <  AE015451/1759410‑1759243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.