New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2407189	41 (1.000)	4 (0.100)	4/320	NT	8.6%	coding (1376/1566 nt)	PP_2111	putative aerotaxis receptor
	?	AE015451	= 2407201	46 (1.180)					coding (1364/1566 nt)	PP_2111	putative aerotaxis receptor

TCGAGCTTCAGCGGTTGAAGCGCTCCACCAGCGAATACTGGCTACCCGCCGTGCTGGTCAGTTCTTCGCTCAGCAGTGCCGAGTGCTGCGCCTGTTCGGCGGTCTGGTCGGCCAGTTCGGCAATGGTGCTGATGTTGCGGCTGATCTCGTCAGCCACTGCGGTCTGCTCCTCGGTTGCAGCAGCAATCTGGGTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2406992‑2407189 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggccaATATCACCGACATGGCCACCCAGATTGCTGCTGCAACCGAGGAGCAGACCGCAGTGGCTGACGAGATCAGCCGCAACATCAGCACCATTGCCGAACTGGCCGACCAGACCGCCGAACAGGCGCAGCACTCGGCACTGCTGAGCGAAGAACTGACCAGCACGGCGGGTAGCCAGTATTCGCTGG  <  AE015451/2407201‑2407019                                                                                                                                                                                                                                                                                                                                                                                               TCGAGCTTCAGCGGTTGAAGCGCTCCACCAGCGAATACTGGCTACCCGCCGTGCTGGTCCGTTCTTCGCTCAGCAGTGCCGAGTGCTGCGCCTGTTCGGCGGTCTGGTCGGCCAGTTCGGCAATGGTGCTGGTGTTGCGGCTGATCTCGTCAGCCACTGCGGTCTGCTCCTCGGTTGCAGCAGCACTCTGGGT                                                                                                                                                                                              >  2:9460/1‑193                                         gaTACCCGCAGTGCTGGTCAGTTCTTCGCTCAGCAGTGCCGAGTGCTGCGCCTGTTCGGCGGTCTGGTCGGCCAGTTCGGCAATGGTGCTGATGTTGCGGCTGATCTCGTCAGCCACTGCGGTCTGCTCCTCGGTTGCAGCAGCAATCTGGGTGGC                                                                                                                                                                                           <  1:238681/154‑1                                                                                           CCTGTTCGGCGGTCTGGTCGGCCAGTTCGGCAATGGTGCTGATGTTGCGGCTGATCTCGTCAGCCACTGCGGTCTGCTCCTCGGTTGCAGCAGCAATCTGGGTGGC                                                                                                                                                                                           <  2:79518/106‑1                                                                                                                                           GGCTGATCTCGTCAGCCACTGCGGTCTGCTCCTCGGTTGCAGCAGCAATCTGGGTGGCCAATATCACCGACATGGCCACCCAGATTGCTGCTGCAACCGAGGAGCAGACCGCAGTGGCTGACGAGATCAGCCGCAACATCAGCACCATTGCCGAACTGGCCGACCAGACCGCCGAACAGGCGCAGCACTCGGCACTGCT                                              >  1:282196/1‑199                                                                                                                                                                      GCTCCTCGGTTGCAGCAGCAATCTGGGTGGCCAATATCACCGACATGGCCACCCAGATTGCTGCTGCAACCGAGGAGCAGACCGCAGTGGCTGACGAGATCAGCCGCAACA                                                                                                           >  1:347368/1‑111                                                                                                                                                                                    GCAGCAATCTGGGTGGCCAATATCACCGACATGGCCACCCAGATTGCTGCTGCAACCGAGGAGCAGACCGCAGTGGCTGACGAGATCAGCCGCAACATCAGCACCATTGCCGAACTGGCCGACCAGACCGCCGAACAGGCGCAGCACTCGGCACTGCTGAGCGAAGAACTGACCAG                            >  2:605836/1‑176                                                                                                                                                                                       GCAATCTGGGTGGCCAATATCACCGACATGGCCACCCAGATTGCTGCTGCAACCGAGGAGCAGACCGCAGTGGCTGACGAGATCAGCCGCAA                                                                                                             >  2:248382/1‑92                                                                                                                                                                                               GGTGGCCAATATCACCGACATGGCCACCCAGATTGCTGCTGCAACCGAGGAGCAGACCGCAGTGGCTGACGAGATCAGCCGCAACATCAGCACCATTGCCGAACTGGCCGACCAGACCGCCGAACAGGCGCAGCACTCGGCACTGCTGAGCGAAGAACTGACCAGCACGGCGGGTAGCCAG            >  1:537410/1‑181                                                                                                                                                                                                    CCAATATCACCGACATGGCCACCCAGATTGCTGCTGCAACCGAGGAGCAGACCGCAGTGGCTGACGAGATCAGCCGCAACATCAGCACCATTGCCGAACTGGCCGACCAGACCGCCGAACAGGCGCAGCACTCGGCACTGCTGAGCGAAGAACTGACCAGCACGGCGGGTAGCCAGTATTCGCTGG  <  1:80173/186‑1                                                                                                                                                                                                                                                                                                                                                                                               TCGAGCTTCAGCGGTTGAAGCGCTCCACCAGCGAATACTGGCTACCCGCCGTGCTGGTCAGTTCTTCGCTCAGCAGTGCCGAGTGCTGCGCCTGTTCGGCGGTCTGGTCGGCCAGTTCGGCAATGGTGCTGATGTTGCGGCTGATCTCGTCAGCCACTGCGGTCTGCTCCTCGGTTGCAGCAGCAATCTGGGTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2406992‑2407189 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggccaATATCACCGACATGGCCACCCAGATTGCTGCTGCAACCGAGGAGCAGACCGCAGTGGCTGACGAGATCAGCCGCAACATCAGCACCATTGCCGAACTGGCCGACCAGACCGCCGAACAGGCGCAGCACTCGGCACTGCTGAGCGAAGAACTGACCAGCACGGCGGGTAGCCAGTATTCGCTGG  <  AE015451/2407201‑2407019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.