New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2410319 =	56 (1.370)	3 (0.080)	3/314	NT	6.2%	coding (1129/2742 nt)	acnA‑I	aconitate hydratase 1
	?	AE015451	2410393 =	38 (0.990)					coding (1055/2742 nt)	acnA‑I	aconitate hydratase 1

GGTTTCTTCCCGGTCGACCAAGTCACTCTGGACTATCTGCGCCTCTCGGGCCGCCCCGAAGCGACCGTGCAACTGGTCGAGCAGTACTGCAAGGCACAGGGCATGTGGCGCCTGCCCGGCCAGGAGCCGTCATTCAGCGACACGCTGGCCCTGGACATGGACGACGTCGAAGCCAGCCTGGCCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2410505‑2410319 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggccgggcAGGCGCCACATGCCCTGTGCCTTGCAGTACTGCTCGACCAGTTGCACGGTCGCTTCGGGGCGGCCCGAGAGGCGCAGATAGTCCAGAGTGACTTGGTCGACCGGGAAGAAACCACAGGTGGCGCCGTATTCCGGTGCCATGTTGGCGATGGTTGCGCGGTCGGCCAGGGGCAACTC  >  AE015451/2410393‑2410568                                                                                                                                                                                                                                                                                                                                                                             GGTTTCTTCCCGGTCGACCAAGTCACTCTGGACTATCTGCGCCTCTCGGGCCGCCCCGAAGCGACCGTGCAACTGGTCGAGCAGTACTGCAAGGCACAGGGCATGTGGCGCCTGCCCGGCCAGGAGCCGTCATTCAGCGACACGCTGGCCCTGGACATGGACGACGTCGAAGCCAGCCT                                                                                                                                                                                          <  2:499506/179‑1                                       GCGCCTCTCGGGCCGCCCCGAAGCGACCGTGCAACTGGTCGAGCAGTACTGCAAGGCACAGGGCATGTGGCGCCTGCCCGGCCAGGAGCCGTCATTCAGCGACACGCTGGCCCTGGACATGGACGACGTCGAAGCCAGCCT                                                                                                                                                                                          <  1:162711/141‑1                                       GCGCCTCTCGGGCCGCCCCGAAGCGACCGTGCAACTGGTCGAGCAGTACTGCAAGGCACAGGGCATGTGGCGCCTGCCCGGCCAGGAGCCGTCATTCAGCGACACGCTGGCCCTGGACATGGACGACGTCGAAGCCAGCCT                                                                                                                                                                                          >  2:162710/1‑141                                                 GGCCGCCCCGAAGCGACCGTGCAACTGGTCGAGCAGTACTGCAAGGCACAGGGCATGTGGCGCCTGCCCGGCCAGGATCCGTCATTCAGCGAAACGCTGGCCCTGGACATGGACGACGTCGAAGCCAGCCTGG                                                                                                                                                                                        >  2:293947/1‑133                                                                                                                          AGGAGCCGTCATTCAGCGACACGCTGGCCCTGGACATGGACGACGTCGAAGCCAGCCTGGCCGGGCAGGCGCCACATGCCCTGTGCCTTGCAGTACTGCTCGACCAGTTGCACGGTCGCTTCGGGGCGGCCCGAGAGGCGCAGATAGTCCAGAGTGACTTGGTCGACCGGGAAGAAACCACAGGTGGCGCCGTATTCCGGTGCCATGTTGGCGATGGTTGCGCGGTCGGCCAGG          >  2:433137/1‑234                                                                                                                                CGTCATTCAGCGACACGCTGGCCCTGGACATGGACGACGTCGAAGCCAGCCTGGCCGGGCAGGCGCCACATGCCCTGTGCCTTGCAGTACTGCTCGACCAGTTGCACGGTCGCTTCGGGGCGGCCCGAGAGGCGCAGATAGTCCAGAGTGACTTGGTCGACCGGGAAGAAACCACAGGTGGCGCCGTATTCCGGTGCCATGTTGGCGATGGTTGCGCGGTCGGCCAGGGGCAACTC  <  1:433138/236‑1                                                                                                                                CGTCATTCAGCGACACGCTGGCCCTGGACATGGACGACGTCGAAGCCAGCCTGGCCGGGCAGGCGCCACATGCCCTGTGCCTTGCAGTACTGCTCGACCAGTTGCACGGTCGCTTC                                                                                                                          <  2:697829/116‑1                                                                                                                                                                                                                                                                                                                                                                             GGTTTCTTCCCGGTCGACCAAGTCACTCTGGACTATCTGCGCCTCTCGGGCCGCCCCGAAGCGACCGTGCAACTGGTCGAGCAGTACTGCAAGGCACAGGGCATGTGGCGCCTGCCCGGCCAGGAGCCGTCATTCAGCGACACGCTGGCCCTGGACATGGACGACGTCGAAGCCAGCCTGGCCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2410505‑2410319 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggccgggcAGGCGCCACATGCCCTGTGCCTTGCAGTACTGCTCGACCAGTTGCACGGTCGCTTCGGGGCGGCCCGAGAGGCGCAGATAGTCCAGAGTGACTTGGTCGACCGGGAAGAAACCACAGGTGGCGCCGTATTCCGGTGCCATGTTGGCGATGGTTGCGCGGTCGGCCAGGGGCAACTC  >  AE015451/2410393‑2410568

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.