New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 248767134 (0.830)3 (0.080) 3/316 NT 7.9% coding (43/516 nt) PP_2182 conserved protein of unknown function
?AE015451 = 2487726 38 (0.990)coding (98/516 nt) PP_2182 conserved protein of unknown function

CACGCGTGCTTTGGGTGTTCAGCTGAGGGCCGTCGCACGGGCATGCGCGTTGTGCTTCGGCTAGCCGGGAAAGTTGGCCTGCAAGCAATGTGCAGGCTGCATGGGGTATCCTTGCACCACGCAATCAACTTCGAAGCAGTGAATGAACAATGGGTTTTGAACAACTAGCTGAGCTACGAGACCGCCTGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2487480‑2487671
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctgcgggGGCGACTTGCGCTTGGGCGGTTTCGCGCTCTCGGCCTTTACCTGCCCTTTTTCCGCCCGCAGGCGGTCTCGTAGCTCAGCTAGTTGTTCAAAACCCATTGTTCATTCACTGCTTCGAAGTTGATTGCGTGGTGCAAGGATACCCCATGCAGCCTGCACATTGCTTGCAGGCCAACTTTCCCGGCTAGCCGAAGCACAACGCGCATGCCCGTGCGACGG  <  AE015451/2487726‑2487509
                                                                                                                                                                                                                                                                                                                                                                                                                          
CACGCGTGCTTTGGGTGTTCAGCTGAGGGCCGTCGCACGGGCATGCGCGTTGTGCTTCGGCTAGCCGGGAAAGTTGGCCTGCAAGCAATGTGCAGGCTGCATGGGGTATCCTTGCACCACGCAATCAACTTCGAAGCAGTGAATGAACAATGGGTTTTGAACAACTAGCTGAGCTACGAGACCGCCTG                                                                                                                                                                                                                                >  1:271737/1‑188
                                                                                                                     CACGCAATCAACTTCGAAGCAGTGAATGAACAATGGGTTTTGAACAACTAGCTGAGCTACGAGACCGCCTGCGGGGGCGACTTGCGCTTGGGCGGTTTCGCGCTCTCGGCCTTTACCTGCCCTTTTTCCGCCCGCAGGCG                                                                                                                                                           >  1:368401/1‑140
                                                                                                                     CACGCAATCAACTTCGAAGCAGTGAATGAACAATGGGTTTTGAACAACTAGCTGAGCTACGAGACCGCCTGCGGGGGCGACTTGCGCTTGGGCGGTTTCGCGCTCTCGGCCTTTACCTGCCCTTTTTCCGCCCGCAGGCG                                                                                                                                                           <  2:368400/140‑1
                                                                                                                          AATCCACTTCGAAGCAGTGAATGAACAATGGGTTTTGAACAACTAGCTGAGCTACGAGACCGC                                                                                                                                                                                                                                   >  2:165466/1‑63
                                                                                                                                                              GAACAACTAGCTGAGCTACGAGACCGCCTGCGGGGGCGACTTGCGCTTGGGCGGTTTCGCGCTCTCGGCCTTTACCTGCCCTTTTTCCGCCCGCAGGCGGTCTCGTAGCTCAGCTAGTTGTTCAAAACCCATTGTTCATTCACTGCTTCGAAGTTGATTGCGTGGTGCAAGGATACCCCATGCAGCCTGCACATTGCT                                                        >  2:329595/1‑198
                                                                                                                                                                                 GAGACCGCCTGCGGGGGCGACTTGCGCTTGGGCGGTTTCGCGCGCTCGGCCTTTACCTGCCCTTTTTCCGCCCGCAGGCGGTCTCGTAGCT                                                                                                                                                >  2:507395/1‑91
                                                                                                                                                                                      CGCCTGCGGGGGCGACTTGCGCTTGGGCGGTTTCGCGCTCTCGGCCTTTACCTGCCCTTTTTCCGCCCGCAGGCGGTCTCGTAGCTCAGCTAGTTGTTCAAAACCCATTGTTCATTCACTGCTTCGAAGTTGATTGCGTGGTGCAAGGATACCCCATGCAGCCTGCACATTGCTTGCAGGCCAACTTTCCCGGCTAGCC                               <  2:175183/199‑1
                                                                                                                                                                                      CGCCTGCGGGGGCGACTTGCGCTTGGGCGGTTTCGCGCTCTCGGCCTTTACCTGCCCTTTTTCCGCCCGCAGGCGGTCTCGTAGCTCAGCTAGTTGTTCAAAACCCATTGTTCATTCACTGCTTCGAAGTTGATTGCGTGGTGCAAGGATACCCCATGCAGC                                                                    <  2:627070/162‑1
                                                                                                                                                                                         CTGCGGGGGCGACTTGCGCTTGGGCGGTTTCGCGCTCTCGGCCTTTACCTGCCCTTTTTCCGCCCGCAGGCGGTCTCGTAGCTCAGCTAGTTGTTCAAAACCCATTGTTCATTCACTGCTTCGAAGTTGATTGCGTGGTGCAAGGATACCCCATGCAGCCTGCACATTGCTTGCAGGCCAACTTTCCCGGCTAGCCGTAGCACAACGCGCATGCCCGTGCGCCGG  >  1:140555/1‑225
                                                                                                                                                                                                                                                                                                                                                                                                                          
CACGCGTGCTTTGGGTGTTCAGCTGAGGGCCGTCGCACGGGCATGCGCGTTGTGCTTCGGCTAGCCGGGAAAGTTGGCCTGCAAGCAATGTGCAGGCTGCATGGGGTATCCTTGCACCACGCAATCAACTTCGAAGCAGTGAATGAACAATGGGTTTTGAACAACTAGCTGAGCTACGAGACCGCCTGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2487480‑2487671
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctgcgggGGCGACTTGCGCTTGGGCGGTTTCGCGCTCTCGGCCTTTACCTGCCCTTTTTCCGCCCGCAGGCGGTCTCGTAGCTCAGCTAGTTGTTCAAAACCCATTGTTCATTCACTGCTTCGAAGTTGATTGCGTGGTGCAAGGATACCCCATGCAGCCTGCACATTGCTTGCAGGCCAACTTTCCCGGCTAGCCGAAGCACAACGCGCATGCCCGTGCGACGG  <  AE015451/2487726‑2487509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.