New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 2813116 = | 38 (0.930) | 3 (0.080) | 3/300 | NT | 9.5% | coding (301/1017 nt) | pheS | Phenylalanine‑‑tRNA ligase alpha subunit |
? | AE015451 | 2813134 = | 23 (0.630) | coding (319/1017 nt) | pheS | Phenylalanine‑‑tRNA ligase alpha subunit |
TGCATCGCCCGCGCCGGGTGGTGGCCAGGGATGTTGAGCGCTTCGAAGTTGTGGTAGTCGTCTTCCACTTCTGGGCCTTCGGCAATGCCGTAGCCAATGTGGGTGAAGAACTGCTCGATGCGCTCGAGTGTACGGGTGATCGGGTGCAGGCCACCGGTGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/2813279‑2813116 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggccaccggtggcctgCACCCGATCACCCGTACACTCGAGCGCATCGAGCAGTTCTTCACCCACATTGGCTACGGCATTGCCGAAGGCCCAGAAGTGGAAGACGACTACCACAACTTCGAAGCGCTCAACATCCCTGGCCACCACCCGGCGCGGGCGATGCACGACACCTTCTACTTCAATGCCAACATGCTGCTGCGCACCCACACCTCGCCGGTGCAGGTGCGGA > AE015451/2813134‑2813344 TGCATCGCCCGCGCCGGGTGGTGGCCAGGGATGTTGAGCGCTTCGAAGTTGTGGTAGTCGTCTTCCACTTCTGGGCCTTCGGCAATGCCGTAGCCAATGTGGGTGAAGAACTGCTCGATGCGCTCGAGTGTACGGGTGATCGGGTGCAG > 2:746754/1‑149 ACTTCTGGGCCTTCGGCAATGCCGTAGCCAATGTGGGTGAAGAACTGCTCGATGCGCTCGAGTGTACGGGTGATCGGGTGCCGGCCACCGGTGGCCCGTACCCGGTCACCCGGACACTCGAGCGCGTCGCGCAGGTCTTCACCCACA > 2:119962/1‑147 agGTGGGTGAAGAACTGCTCGATGCGCTCGAGTGTACGGGTGATCGGGTGCAGGCCACCGGTGGCCTGCACCCGATCACCCGTACACTCGAGCGCATCGAGCAGTTCTTCACCCACATTGGCTACGGCATTGCCGAAGGCCCAGAAGTGGAAGACGACTACCACAACTTCGAAGCGCTCAACATCCCT < 1:119962/186‑1 GGGTGAAGAACTGCTCGATGCGCTCGAGTGTACGGGTGATCGGGTGCAGGCCACCGGTGGCCTGCACCCGATCACCCGTACACTCGAGCGCATCGAGCAGTTCTTCACCCACATTCGCTACGGCATTGCCGAAGGCC > 1:321852/1‑137 GTGCAGGCCACCGGTGGCCTGCACCCGATCACCCGTACACTCGAGCGCATCGAGCAGTTCTTCACCCACATTGGCTACGGCATTGCCGAAGGCCCAGAAGTGGAAGACGACTACCACAACTTCGAAGCGCTCAACATCCCTGGCCACCACCCGGCGCGGGCGATGCACGACACCTTCTACTTCAATGCCAACATGCTGCTGCGCACCCACACCTCGCCGGTGCAGGTGCGGA > 2:489529/1‑232 ACCGGTGGCCTGCACCCGATCACCCGTACACTCGAGCGCATCGAGCAGTTCTTCACCCACATTGGCTACGGCATTGCCGAAGGCCCAGAAGTGGAAGACGACTACCACCACTTCGAAGCGCTCAACATCCCTGGCCACCACCCGGCGCGGG > 1:632511/1‑151 TGCATCGCCCGCGCCGGGTGGTGGCCAGGGATGTTGAGCGCTTCGAAGTTGTGGTAGTCGTCTTCCACTTCTGGGCCTTCGGCAATGCCGTAGCCAATGTGGGTGAAGAACTGCTCGATGCGCTCGAGTGTACGGGTGATCGGGTGCAGGCCACCGGTGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/2813279‑2813116 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggccaccggtggcctgCACCCGATCACCCGTACACTCGAGCGCATCGAGCAGTTCTTCACCCACATTGGCTACGGCATTGCCGAAGGCCCAGAAGTGGAAGACGACTACCACAACTTCGAAGCGCTCAACATCCCTGGCCACCACCCGGCGCGGGCGATGCACGACACCTTCTACTTCAATGCCAACATGCTGCTGCGCACCCACACCTCGCCGGTGCAGGTGCGGA > AE015451/2813134‑2813344 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |