New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4003754 =	50 (1.220)	3 (0.080)	3/322	NT	6.3%	coding (94/423 nt)	PP_3532	Transcriptional regulator, AsnC family
	?	AE015451	4003784 =	42 (1.070)					coding (64/423 nt)	PP_3532	Transcriptional regulator, AsnC family

AGCGCTTGAGATTATCGAAGTGAAGCCGCATGAACATTTTGATGACAGGTTGCGTCAATCGGAAGCAGGCAGGTTGTCAGTTTCGTCAGGCTTCTGGACAATCTGCCAACCCAGCGTAGCAATCTGATTATTTGGCGGGCTTATGGACACGATCGATCGGGAACTGATTGCACTGTTGCGGGACAACGCACGTACCCCTGTGCTGACCCTGGCGAAGAAGCTGAAGGTGGCCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4003989‑4003754 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagggTCAGCACAGGGGTACGTGCGTTGTCCCGCAACAGTGCAATCAGTTCCCGATCGATCGTGTCCATAAGCCCGCCAAAT  >  AE015451/4003784‑4003860                                                                                                                                                                                                                                                                                                                           AGCGCTTGAGATTATCGAAGTGAAGCCGCATGAACATTTTGATGACAGGTTGCGTCAATCGGAAGCAGGCAGGTTGTCAGTTTCGTCAGGCTTCTGGACAATCTGCCAACCCAGCGTAGCAATCTGATTATTTGGCGGGCTTATGGACACGATCGATCGGGAACTGATTGCACTGTTGCGGGACAACGCACGTACCCCTGTGCTGACCCTGGCGAAGAAGCTGAAGGTGGCCAGGG                                                                               <  1:518730/236‑1                                        gGATGACAGGTTGCGTCAATCGGAAGCAGGCAGGTTGTCAGTTGCGTCAGGCTTCTGGACAATCTGCCAACCCAGCGTAGCAATCTGATTATTTGGCGGGCTTATGGACACGATCGATCGGGAACTGATTGCACTGTTGCGGGACAACGCACGTACCCCTGTGCTGACCCTGGCGAAGAAGCTGAAGGTGGCCAGGG                                                                               <  2:54379/196‑1                                              CAGGTTGCGGCAATCGGAAGCAGGCAGGTTGTCAGTTTCGTCAGGCTTCTGGACAATCTGCCAACCCAGCGTAGCAATCTGATTATTTGGCGGGCTTATGGACACGATCGATCGGGAACTGATTGCACTGTTGCGGGACAACGCACGTACCCCTGTGCTGACCCTGGCGAAGAAGCTGAAGGTGGCCAGGG                                                                               <  1:31908/191‑1                                                                AGCAGGCAGGTTGTCAGTTTCGTCAGGCTTCTGGACAATCTGCCAACCCAGCGTAGCAATCTGATTATTTGGCGGGCTTATGGACACGATCGATCGGGAACTGATTGCACTGTTGCGGGACAACGCACGTACCCCTGTGCTGACCCTGGCGAAGAAGCTGAAGGTGGCCAGGG                                                                               <  2:635122/173‑1                                                                                                                      AGCAATCTGATTATTTGGCGGGCTTATGGACACGATCGATCGGGAACTGATTGCACTGTTGCGGGACAACGCACGTACCCCTGTGCTGACCCTGGCGAAGAAGCTGAAGGTGGCCAGGGTCAGCACAGGGGTACGTGCGTTGTCCCGCAACAGTGC                                          >  1:457460/1‑156                                                                                                                      AGCAATCTGATTATTTGGCGGGCTTATGGACACGATCGATCGGGAACTGATTGCACTGTTGCGGGACAACGCACGTACCCCTGTGCTGACCCTGGCGAAGAAGCTGAAGGTGGCCAGGGTCAGCACAGGGGTACGTGCGTTGTCCCGCAACAGTGC                                          <  2:457459/156‑1                                                                                                                                                                                 TGCGGGACAACGCACGTACCCCTGTGCTGACCCTGGCGAAGAAGCTGGAGGTGGCCAGGGTCAGCACAGGGGTACGTGCGTTGTCCCGCAACAGTGCAATCAGTTCCCGATCGATCGTGTCCATAAGCCCGCCAAAT  <  2:340362/137‑1                                                                                                                                                                                                                                                                                                                           AGCGCTTGAGATTATCGAAGTGAAGCCGCATGAACATTTTGATGACAGGTTGCGTCAATCGGAAGCAGGCAGGTTGTCAGTTTCGTCAGGCTTCTGGACAATCTGCCAACCCAGCGTAGCAATCTGATTATTTGGCGGGCTTATGGACACGATCGATCGGGAACTGATTGCACTGTTGCGGGACAACGCACGTACCCCTGTGCTGACCCTGGCGAAGAAGCTGAAGGTGGCCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4003989‑4003754 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagggTCAGCACAGGGGTACGTGCGTTGTCCCGCAACAGTGCAATCAGTTCCCGATCGATCGTGTCCATAAGCCCGCCAAAT  >  AE015451/4003784‑4003860

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.