New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4743577 =	55 (1.350)	4 (0.100)	4/320	NT	7.3%	coding (415/1593 nt)	PP_4197	Transcriptional regulator, GntR family
	?	AE015451	4743666 =	49 (1.260)					coding (326/1593 nt)	PP_4197	Transcriptional regulator, GntR family

CAGCCATGCCACGGTGTTGCAGGCCTATGCCAATCTCGAGGACCAAGGGCTTATCCGGGCGCGGCCGCAGTCTGGCTATTACGTGCACCAGACCCCTGCCTTGACCGCGCAAACCCCCGACATCGCTCGGGTGGAGCGCCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4743719‑4743577 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcccggATAAGCCCTTGGTCCTCGAGATTGGCATAGGCCTGCAACACCGTGGCATGGCTGACATTGAGCTGGGCGCTCATCTTGCGCACGGAGGGTACCCGCTCGCCTGGCTGGTAGACACCGCGACGGATATCATCGGCCAGTTGCTGGGCGATACGCTGGTACAGCAGCAGGTTGGTCATGTCGACATGCTCGTTGTTCTTGTACGGGTCACTGACGGTAGA  >  AE015451/4743666‑4743883                                                                                                                                                                                                                                                                                                                                                                           CAGCCATGCCACGGTGTTGCAGGCCTATGCCAATCTCGAGGACCAAGGGCTTATCCGGGCGCGGCCGCAGTCTGGCTATTACGTGCACCAGACCCCTGCCTTGACCGCGCAAACCCCCGACATCGCTCGGGTGGAGCGCCCGGATAAGCCCTTGGTCCTCGAGATTGGCATAGGCCTGCAA                                                                                                                                                                                      <  2:418728/181‑1                                                        CGGGCGCGGCCGCAGTCTGGCTATTACGTGCACCAGACCCCTGCCTTGACCGCGCAAACCCCCGACATCGCTCGGGTGGAGCGCCCGGATAAGCCCTTGGTCCTCGAGATTGGCATAGGCCTGCAACACCGTGGCATGGCTGACATTGAGCTGGGCGCTCATCTTGCGCACGGAGGGTACCCGCTCGCCTGGCTGGTAGACACCGCGACGGATATCATCGGCCAGTTGCTGGGC                                                                          >  2:678157/1‑234                                                                                 ACGTGCACCAGACCCCTGCCTTGACCGCGCAAACCCCCGACATCGCTCGGGTGGAGCGCCCGGATAAGCCCTTGGTCCTCGAGATTGGCATAGGCCTGCAACACCGTGGCATGGCTGACATTGAGCTGGGCGCTCATCTTGCGCACGGAGGGTACCCGCTCGCCTGGCTGGTAGACACCGCGACGGATATCATCGGCCAGTTGCTGGGCGATACGCTGGTACAGCAGCAGGTTGGT                                               <  1:678158/236‑1                                                                                                                         CATCGCTCGGGTGGAGCGCCCGGATAAGCCCTTGGTCCTCGAGATTGGCATAGGCCTGCAACACCGTGGCATGGCTGACATTGAGCTGGGCGCTCATCTTGCGCACGGAGGGTACCCGCTCGCCTGGCTGGTAGACACCGCGACGGATATCATCGGCCAGTTGCTGGGCGATACGCTGGTACAGCAGCAGGTTGGTCATGTCGACATGCTCGTTGTTCTTGTACGGGTCACTGACG       >  1:524037/1‑236                                                                                                                                          GCCCGGATAAGCCCTTGGTCCTCGAGATTGGCATAGGCCT                                                                                                                                                                                          <  2:179024/40‑1                                                                                                                                            CCGGATAAGCCCTTGGTCCTCGAGATTGGCATAGGCCTGCAACACCGTGGCATGGCTGACATTGAGCTGGGCGCTCATCTTGCGCACGGAGGGTACCCGCTCGCCTGGCTGGTAGACACCGCGACGGATATCATCGGCCAGTTGCTGGGCGATACGCg                                                                  >  1:83295/1‑157                                                                                                                                            CCGGATAAGCCCTTGGTCCTCGAGATTGGCATAGGCCTGCAACACCGTGGCATGGCTGACATTGAGCTGGGCGCTCATCTTGCGCACGGAGGGTACCCGCTCGCCTGGCTGGTAGACACCGCGACGGATATCATCGGCCAGTTGCTGGGCGATACGCTGGTACAGCAGCAGGTTGGTCATGTCGACATGCTCGTTGTTCTTGTACGGGTCACTGACGGTAGA  <  1:455204/222‑1                                                                                                                                            CCGGATAAGCCCTTGGTCCTCGAGATTGGCATAGGCCTGCAACACCGTGGCATGGCTGACATTGAGCTGGGCGCTCATCTTGCGCACGGAGGGTACCCGCTCGCCTGGCTGGTAGACACCGCGACGGATATCATCGGCCAGTTGCTGGGCGATACGCTGGTACAGCAGCAGGTTGGTCATGTCGACATGCTCGTTGTTCTTGTACGGGTCACTGACGGTAGA  >  2:455203/1‑222                                                                                                                                            CCGGATAAGCCCTTGGTCCTCGAGATTGGCATAGGCCTGCAACACCGTGGCATGGCTGACATTGAGCT                                                                                                                                                            <  1:622382/68‑1                                                                                                                                            CCGGATAAGCCCTTGGTCCTCGAGATTGGCATAGGCCTGCAACACCGTGGCATGGCTGACATTGAGCT                                                                                                                                                            >  2:622381/1‑68                                                                                                                                                                                                                                                                                                                                                                           CAGCCATGCCACGGTGTTGCAGGCCTATGCCAATCTCGAGGACCAAGGGCTTATCCGGGCGCGGCCGCAGTCTGGCTATTACGTGCACCAGACCCCTGCCTTGACCGCGCAAACCCCCGACATCGCTCGGGTGGAGCGCCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4743719‑4743577 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcccggATAAGCCCTTGGTCCTCGAGATTGGCATAGGCCTGCAACACCGTGGCATGGCTGACATTGAGCTGGGCGCTCATCTTGCGCACGGAGGGTACCCGCTCGCCTGGCTGGTAGACACCGCGACGGATATCATCGGCCAGTTGCTGGGCGATACGCTGGTACAGCAGCAGGTTGGTCATGTCGACATGCTCGTTGTTCTTGTACGGGTCACTGACGGTAGA  >  AE015451/4743666‑4743883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.