New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4837161	30 (0.730)	3 (0.080)	3/310	NT	8.3%	coding (1168/1425 nt)	ccoN‑I	cytochrome c oxidase subunit I, cbb3‑type
	?	AE015451	= 4837272	39 (1.030)					coding (1279/1425 nt)	ccoN‑I	cytochrome c oxidase subunit I, cbb3‑type

TTCCTGGTGGTGTCACTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCCATCAAGACGGTCAACGCCCTGTCCCACTACACCGACTGGACCATCGGCCACGTCCACGCCGGCGCCCTCGGCTGGGTAGCGATGATCTCGATCGGCGCGCTGTACCACACCATCCCCAAAGTGTTCGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4836918‑4837161 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctggccaccaAGGTTTCCACGAACGAGTAGGTGAGCGTGCCGTCGCTGTTGACCGCGCGCCACATCAGGCCCTGGGCGATGCCGTTGACCCACATCGAGGCGATGTACAGCACGGTACCGATGGTGGCCAGCCAGAAGTGCGCATTGATCAGGCCGAGGCTGTACATGCGTTCTTTGCCGAACACTTTGGGGATGGTGTGGTACAGCGCGCCGATCGAGATCATCGC  <  AE015451/4837272‑4837056                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTCCTGGTGGTGTCACTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCCATCAAGACGGTCAACGCCCTGTCCCACTACACCGACTGGACCATCGGCCACGTCCACGCCGGCGCCCTCGGCTGGGTAGCGATGATCTCGATCGGCGCGCTGTACCACACCATCCCCAAAGTGTTCGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCT                                                                                                                                                                                                                                   <  1:289695/236‑1                     GTTCTACGGCATGTCCCCCTTCGAAGGCCCGATGATGGCCATCAAGACGGTCAACGCCCTGTCCCCCTACACCGACTGGACCATCGGCCACGTCCACGCCGGCGCCCTCGGCTGGGTAGCGATGATCTCGATCGGCGCGCTGTACCACACCATCCCCAAAGTGTTCGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTG                                                                                                                                                                                                                                  <  1:216876/217‑1                                  TCCACCTTCGAAGGCCCGATGATGGCCATCAAGACGGTCAACGCCCTGTCCCACTACACCGACTGGACCATCGGCCACGTCCACGCCGGCGCCCTCGGCTGGGTAGCGATGATCTCGATCGGCGCGCTGTACCACACCATCCCCAAAGTGTTCGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCT                                                                                                                                                                                                                                       <  2:554717/199‑1                                                                                                 TGGACCATCGGCCACGTCCACGCCGGCGCCCTCGGCTGGGTAGCGATGATCTCGATCGGCGCGCTGTACCACACCATCCCCAAAGTGTTCGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCAAGGTTTCCA                                                                                                                                                                                                                  <  1:187674/157‑1                                                                                                    ACCATCGGCCACGTCCACGCCGGCGCCCTCGGCTGGGTAGCGATGATCTCGATCGGCGCGCTGTACCACACCATCCCCAAAGTGTTCGGCAAAGAAGGCCTGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGC                                                                                                                                                                                                                                >  2:716905/1‑140                                                                                                                                                                              CCCCAAAGTGTTCGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCAAGGTTTCCACGAACGAGTAGGTGAGCGTGCCGTCGCTGTTGACCGCGCGCCACATCAGGCCCTGGGCGATGCCGTTGACCCACATCGAGGCGATGTACAGCACGGTACCGATGGTGGCCAGCCAGAAGTGCGCATgg                                                                                  >  2:720090/1‑206                                                                                                                                                                                CCAAAGTGTTCGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCAAGGTTTCCACGAACGAGTAGGTGAGCGTGCCGTCGCTGTTGACCGCGCGCCACATCAGGCCCTGGGCCATGCCGTTGACCCACA                                                                                                                                       >  2:586286/1‑153                                                                                                                                                                                CCAAAGTGTTCGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTG                                                                                                                                                                                                                                  >  1:641458/1‑62                                                                                                                                                                                CCAAAGTGTTCGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTG                                                                                                                                                                                                                                  <  2:641457/62‑1                                                                                                                                                                                                                                      TCTGGCTGGCCACCAAGGTTTCCACGAACGAGTAGGTGAGCGTGCCGTCGCTGTTGACCGCGCGCCACATCAGGCCCTGGGCGATGCCGTTGACCCACATCGAGGCGATGTACAGCACGGTACCGATGGTGGCCAGCCAGAAGGGCGCATTGCTCAGGCCGAGGCT                                                                    >  1:178916/1‑166                                                                                                                                                                                                                                        TGGCTGGCCACCAAGGTTTCCACGAACGAGTAGGTGAGCGTGCCGTCGCTGTTGACCGCGCGCCACATCAGGCCCTGGGCGATGCCGTTGACCCACATCGAGGCGATGTACAGCACGGTACCGATGGTGGCCAGCCAGAAGTGCGCATTGATCAGGCCGAGGCTGTACATGCGTTCTTTGCCGAACACTTTGGGGATGGTGTGGTACAGCGCGCCGAACGA           >  1:234916/1‑221                                                                                                                                                                                                                                               CCACCAAGGTTTCCACGAACGAGTAGGTGAGCGTGCCGTCGCTGTTGACCGCGCGCCACATCAGGCCCTGGGCGATGCCGTTGACCCACATCGAGGCGATGTACAGCACGGTACCGATGGTGGCCAGCCAGAAGTGCGCATTGATCAGGCCGAGGCTGTACATGCGTTCTTTGCCGAACACTTTGGGGATGGTGTGGTACAGCGCGCCGATCGAGATCATCGC  >  1:302080/1‑223                                                                                                                                                                                                                                               CCACAAAGGTTTCAACGAACGAGTAGGTGAGCGTGCCGTCGCTGTTGACCGCGCGCCACATCAGGCCCTGGGCGATGCCGTTGACCCACATCGAGGCGATGTACAGCACGGTACCGATGGTGGCCAGCCAGAAGTGCGCATTGATCAGGCCGAGGCTGTACATGCGTTCTTTGCCGAACACTTTGG                                       <  1:103631/186‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTCCTGGTGGTGTCACTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCCATCAAGACGGTCAACGCCCTGTCCCACTACACCGACTGGACCATCGGCCACGTCCACGCCGGCGCCCTCGGCTGGGTAGCGATGATCTCGATCGGCGCGCTGTACCACACCATCCCCAAAGTGTTCGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4836918‑4837161 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctggccaccaAGGTTTCCACGAACGAGTAGGTGAGCGTGCCGTCGCTGTTGACCGCGCGCCACATCAGGCCCTGGGCGATGCCGTTGACCCACATCGAGGCGATGTACAGCACGGTACCGATGGTGGCCAGCCAGAAGTGCGCATTGATCAGGCCGAGGCTGTACATGCGTTCTTTGCCGAACACTTTGGGGATGGTGTGGTACAGCGCGCCGATCGAGATCATCGC  <  AE015451/4837272‑4837056

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.