New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | = 5337245 | 32 (0.780) | 3 (0.080) | 3/322 | NT | 8.7% | coding (695/1443 nt) | PP_4696 | Nitrogen regulation protein NR(I) |
? | AE015451 | = 5337247 | 32 (0.820) | coding (697/1443 nt) | PP_4696 | Nitrogen regulation protein NR(I) |
CCCGCGCCCTGCACAACCTGTCTCGCCGGGCCAAGGCACCGATGATCTCGGTGAACTGCGCGGCCATCCCCGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTTCACCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/5337119‑5337245 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcgcTGGCGCCGGTGAACGCGCCTTTTTCGTGGCCGAACAGTTCGGATTCGATCAGCGTTTCGGGGATGGCCGCGCAGTTCACCGAGATCATCGGTGCCTTGGCCCGGCGAGACAGGTTGTGCAGGGCGCGGGCCACCAGCTCTTTACCGGTGCCCGACTCGCCCTG < AE015451/5337247‑5337085 CCCGCGCCCTGCCCAACCTGTCTCGCCGGGCCAAGGCACCGATGATCTCGGTGAACTGCGCGGCCATCCCCGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTTCACCGG < 2:93090/124‑1 GAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTTCACCGGCGCTGGCGCCGGTGAACGCGCCTTTTTCGTGGCCGAACAGTTCGGATTCGATCAGCGTTTCGGGGATGGCCGCGCAGTTCACCGAGATCATCGGTGCCTTGGCCCGGCGAGACAGGTTGTGCAGGGCGCGGGCCACCAGCTCTTTACCGGTGCCCGACTCGCCCTG > 1:646708/1‑219 CGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTGCACCGGCGCTGGCGCCGGTGAACGCGCCTTTTTCGTGGCCGAACAGTTCGGATTCGATCAGCGTTTCGGGGATGGCCGCGCAGTTCACCGAGATCATCGGTTCCTTGGCac > 1:357134/1‑145 AAGGCGCGTTCACCGGCGCTGGCGCCGGTGAACGCGCCCCTTTCGTGGCCGAACAGTTCGGATTCGATCAGCGTTTCGGGGAT > 2:506405/1‑83 CCCGCGCCCTGCACAACCTGTCTCGCCGGGCCAAGGCACCGATGATCTCGGTGAACTGCGCGGCCATCCCCGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTTCACCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/5337119‑5337245 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcgcTGGCGCCGGTGAACGCGCCTTTTTCGTGGCCGAACAGTTCGGATTCGATCAGCGTTTCGGGGATGGCCGCGCAGTTCACCGAGATCATCGGTGCCTTGGCCCGGCGAGACAGGTTGTGCAGGGCGCGGGCCACCAGCTCTTTACCGGTGCCCGACTCGCCCTG < AE015451/5337247‑5337085 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |