New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5623387 =	47 (1.150)	3 (0.080)	3/320	NT	6.5%	coding (351/1404 nt)	PP_4941	conserved exported protein of unknown function
	?	AE015451	5623405 =	41 (1.050)					coding (333/1404 nt)	PP_4941	conserved exported protein of unknown function

TCTGGGCTGCCCATGAGGCCTGGTTTGCCGACCACCTGTTCTATGCACCGGGTGAGGACTATGCCTACGACTTCGGCGATCAGGTGCAGCAGGTTCCTGCCAGCCTGCACGATGGCTGGCTCAAGGCTGATTGCACGTTGCAAGGCGACGAAACCCTGGTGCTTGAACTGCGGCTAAAAAGCAGCTGGTTGGGGCGCTTTCTCGACCCTCGGGTCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5623604‑5623387 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggtcgagAAAGCGCCCCAACCAGCTGCTTTTTAGCCGCAGTTCAAGCACCAGGGTTTCGTCGCCTTGCAACGTGCAATCAGCCTTGAGCCAGCCATCGTGCAGGCTGGCAGGAACCTGCTGCACCTGATCGCCGAAGTCGTAGGCATAGTCCTCACCCGGTGCATAGAA  >  AE015451/5623405‑5623566                                                                                                                                                                                                                                                                                                                                                                                              TCTGGGCTGCCCATGAGGCCTGGTTTGCCGACCACCTGTTCTATGCACCGGGTGAGGACTATGCCTACGACTTCGGCGATCAGGTGCAGCAGGTTCCTGCCAGCCTGCACGATGGCTGGCTCAAGGCTGATTGCACGTTGCAAGGCGACGAAACCCTGGTGCTTGAACTGCGGCTAAAAAGCAGCTGGTTGGGGCGCTTTCTCGACCCTCGGGT                                                                                                                                                                        >  2:217496/1‑214                                                     TGAGGACTATGCCTACGACTTCGGCGATCAGGTGCAGCAGGTTCCTGCCAGCCTGCACGATGGCTGGCTCAAGGCTGATTGCACGTTGCAAGGCGACGAAACCCTGGTGCTTGAACTGCGGCTAAAAAGCAGCTGGTTGGGGCGCTTTCTCGACCCTCGGGTCGAGAAAGCGCCCCAACCAGCTGCTTTTTAGCCGCAGTTCAAGCACCAGGGTT                                                                                                                   <  1:656833/215‑1                                                     TGAGGACTATGCCTACGACTTCGGCGATCAGGTGCAGCAGGTTCCTGCCAGCCTGCACGATGGCTGGCTCAAGGCTGATTGCACGTTGCAAGGCGACGAAACCCTGGTGCTTGAACTGCGGCTAAAAAGCAGCTGGTTGGGGCGCTTTCTCGACCCTCGGGTCGAGAAAGCGCCCCAACCAGCTGCTTTTTAGCCGCAGTTCAAGCACCAGGGTT                                                                                                                   >  2:656832/1‑215                                                                                                                                                                                                   CGCTCTCTCGACCCTCGGGTCGAGACAGCGCCCCAACCAGCTGCTTTTTAGCCGCAGTTCAAGCACCA                                                                                                                        <  1:660268/68‑1                                                                                                                                                                                                                      TCGAGAAAGCGCCCCAACCAGCTGCTTTTTAGCCGCAGTTCAAGCACCAGGGTTTCGTCGCCTTGCAACGTGCAATCAGCCTTGAGCCATCCATCGTGCAGGCTGGCAGGAACCTGCTGCACCTGATCGCCGAAGTCGTAGGCATAGTCCTCACCCTGTGCATAGAA  >  1:217376/1‑167                                                                                                                                                                                                                                                                                                                                                                                              TCTGGGCTGCCCATGAGGCCTGGTTTGCCGACCACCTGTTCTATGCACCGGGTGAGGACTATGCCTACGACTTCGGCGATCAGGTGCAGCAGGTTCCTGCCAGCCTGCACGATGGCTGGCTCAAGGCTGATTGCACGTTGCAAGGCGACGAAACCCTGGTGCTTGAACTGCGGCTAAAAAGCAGCTGGTTGGGGCGCTTTCTCGACCCTCGGGTCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5623604‑5623387 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggtcgagAAAGCGCCCCAACCAGCTGCTTTTTAGCCGCAGTTCAAGCACCAGGGTTTCGTCGCCTTGCAACGTGCAATCAGCCTTGAGCCAGCCATCGTGCAGGCTGGCAGGAACCTGCTGCACCTGATCGCCGAAGTCGTAGGCATAGTCCTCACCCGGTGCATAGAA  >  AE015451/5623405‑5623566

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.