New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 594362249 (1.200)4 (0.110) 3/292 NT 8.4% intergenic (+30/+55) PP_5210/PP_5211 Alcohol dehydrogenase, zinc‑containing/ChaC‑related protein
?AE015451 = 5943643 45 (1.270)intergenic (+51/+34) PP_5210/PP_5211 Alcohol dehydrogenase, zinc‑containing/ChaC‑related protein

CGCGGCGGTACTGGGCGTGTTCTGGGGGGCATTTGCCCAGCGCCAGCCGGAGGACAACGCGGCCAACTTCCACCAGCTGTTTGCCTGGCATGCCGAGGGCAAGTTGAAGCCGCTGGTGTCGCAGACTTATCCACTGGCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5943382‑5943622
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctcttcgcgggtaaacccTGCACGGTCGCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGCTACTGCCTTACCTGGCCAGCACCACCAACTTACCCACAGCCTGCCGTTGCCCCAGCTTCTCGATAGCAACCCCGGCTTCTGCCAGTGGATAAGTCTGCGACACCAGCGGCTTCAACTTGCCCTCGGCATGCCAGGCAAACAGCTGGTGGAAGTTGGCCGCGTTGTCCTCCGGCTGGCGCTGGGCAAATGC  <  AE015451/5943643‑5943410
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
CGCGGCGGTACTGGGCGTGTTCTGGGGGGCATTTGCCCAGCGCCAGCCGGAGGACAACGCGGCCAACTTCCACCAGCTGTTTGCCTGGCATGCCGAGGGCAAGTTGAAGCCGCTGGTGTCGCAGACTTATCCACTGGCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCG                                                                                                                                                                                                                                                     >  2:642330/1‑232
     CGGTACTGGGCGTGTTCTGGGGGGCATTTGCCCAGCGCCAGCCGGAGGACAACGCGGCCAACTTCCACCAGCTGTTTGCCTGGCATGCCGAGGGCAAGTTGAAGCCGCTGGTGTCGCAGACTTATCCACTGGCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAAC                                                                                                                                                                                                                                              >  2:709501/1‑234
     CGGTACTGGGCGTGTTCTGGGGGGCATTTGCCCAGCGCCAGCCGGAGGACAACGCGGCCAACTTCCACCAGCTGTTTGCCTGGCATGCCGAGGGCAAGTTGAAGCCGCTGGTGTCGCAGACTTATCCACTGGCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCT                                                                                                                                                                                                                                                          >  2:466489/1‑222
       GTACTGGGCGTGGTCTGGGGGGCATTTGCCCAGCGCCAGCCGGAGGACAACGCGGCCAACTTCCACCAGCTGTTTGCCTGGCATGCCGAGGGCAAGTTGAAGCCGCTGGTGTCGCAGACTTATCCACTGGCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACC                                                                                                                                                                                                                                             <  2:575075/233‑1
          CTGGGCGTGTTCTGGGGGGCTTTTGCGCAGCGCCAGCCGGAGGACAACGCGGCCAACTGCCACCAGCTGTTTGCCTGGCATGCCGAGGGCAAGTTGAAGCCGCTGGTGTCGCAGACTTATCCACTGGCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAA                                                                                                                                                                                                                                               <  2:416494/228‑1
                  GTTCTGGGGGGCATTTGCCCAGCGCCAGCCGGAGGACAACGCGGCCAACTTCCACCAGCTGTTTGCCTGGCATGCCGAGGGCAAGTTGAAGCCGCTGGTGTCGCAGACTTATCCACTGGCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCCGGGGTAA                                                                                                                                                                                                                                                >  2:397862/1‑219
                          GGGCATTTGCCCAGCGCCAGCCGGAGGACAACGCGGCCAACTTCCACCAGCTGTTTGCCTGGCATGCCGAGGGCAAGTTGAAGCCGCTGGTGTCGCAGACTTATCCACTGGCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCC                                                                                                                                                                                                                                            >  2:535927/1‑215
                                                       AACGCGGCCAACTTCCACCAGCTGTTTGCCTGGCATGCCGAGGGCAAGTTGAAGCCGCTGGTGTCGCAGACTTATCCACTGGCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAA                                                                                                                                                                                                                                               <  2:618037/183‑1
                                                                                  GCCTGGCATGCCGAGGGCAAGTTGAAGCCGCTGGTGTCGCAGACTTATCCACTGGCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCC                                                                                                                                                                                                                                            >  2:442185/1‑159
                                                                                                    AAGTTGAAGCCGCTGGTGTCGCAGACTTATCCACTGGCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGGAAGGCAGTAGCGGCCT                                                                                                                                                                                                                                                            >  2:134671/1‑125
                                                                                                                                                                                    TGTGGGTAAGTTGGTGGTGCTGGCCAGGAAAGGCAGTAGCGGCCT                                                                                                                                                                                                                                                            >  2:94356/1‑45
                                                                                                                                                                                     GTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCTGCACGGTCGCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGCTACTGCCTTACCTGGCCAGCACCACCAACTTACCCACAGCCTGCCGTTGCCCCAGCTTCTCGATAGCAACCCCGGCTTCTG                                                                                                               >  2:585806/1‑185
                                                                                                                                                                                     GTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCTGCACGGTCGCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGCTACTGCCTTACCTGGCCAGCACCACCAACTTACCCACAGCCTGCCGTTGCCCCAGCTTCTCGATAGCAACCCCGGCTTCTG                                                                                                               <  1:585807/185‑1
                                                                                                                                                                                                     TGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCTGCCCGGGCGCCTGCAGGAGCGGGTTGACCCGCGAAGAGGCCGCTCCTGCCTTACCTGGCCAGCACCACCAACTTACCCACAGCCTGCCGTTGCCCCAGCTTCCCGATCGCAACCCCGGCTT                                                                                                                  >  1:304971/1‑166
                                                                                                                                                                                                     TGCTGGCCAGGTAAGGCAGTAGCCGCCTCTTCGCGGGGAAACCCTGCACGCTCGCCTGTAGGAGCGGGTTTACCCGCGAGGAGGCCGCTACTGCCTTACCTGGCCAGCACCACCAACGTACCCACAGCCTGCCGg                                                                                                                                                 >  1:222256/1‑134
                                                                                                                                                                                                                             GCCTCTTCGCGGGTAAACCCTGCACGGTCGCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGCTACTGCCTTACCTGGCCAGCACCACCAACTTACCCACAGCCTGCCGTTGCCCCAGCTTCTCGATAGCAACCCCGGCTTCTGCCAGTGGA                                                                                                       <  1:556752/153‑1
                                                                                                                                                                                                                                       GGGTAAACCCTGCACGGTCGCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGCTACTGCCTTACCTGGCCAGCACCACCAACTTACCCACAGCCTGCCGTTGCCCCAGCTTCTCGATAGCAACCCCGGCTTCTGCCAGTGGATAAGTCTGCGACACCAGCGGCTTCAACTTGCCCTCGGCATGCCAGGCAAACAGCTGGTGGAAGTTGGCCGCGTTGTCCTCCGGCTGGCGCTG           <  1:728416/235‑1
                                                                                                                                                                                                                                             ACCCTGCACGGTCGCCTGTAGGAGCGGGCTTAACCGCGAAGAGGCCGCTACTGCCTTACCTGGCCAGCACCACCAACTTACCCACAGCCTGCCGTTGCCCCAGCTTCTCGATAGCAACCCCGGCTTCTGCCAGTGGATAAGTCTGCGACACCAGCGGCTTCAACTTGCCCTCGGCATGCCAGGCAAACAGCTGGTGGAAGTTGG                                    >  2:717576/1‑204
                                                                                                                                                                                                                                               CCTGCACGGTCGCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGCTACTGCCTTACCTGGCCAGCACCACCAACTTACCCACAGCCTGCCGTTGCCCCAGCTTCTCGATAGCAACCCCGGCTTCTGCCAGTGGATAAGTCTGCGACACCAGCGGCTTCAACTTGCCCTCGGCATGCCAGGCAAACAGCTGGTGGAAGTTGGCCGCGTTGTCCTCCGGCTGGCGCTGGGCAAATGC  >  1:736077/1‑236
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
CGCGGCGGTACTGGGCGTGTTCTGGGGGGCATTTGCCCAGCGCCAGCCGGAGGACAACGCGGCCAACTTCCACCAGCTGTTTGCCTGGCATGCCGAGGGCAAGTTGAAGCCGCTGGTGTCGCAGACTTATCCACTGGCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5943382‑5943622
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctcttcgcgggtaaacccTGCACGGTCGCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGCTACTGCCTTACCTGGCCAGCACCACCAACTTACCCACAGCCTGCCGTTGCCCCAGCTTCTCGATAGCAACCCCGGCTTCTGCCAGTGGATAAGTCTGCGACACCAGCGGCTTCAACTTGCCCTCGGCATGCCAGGCAAACAGCTGGTGGAAGTTGGCCGCGTTGTCCTCCGGCTGGCGCTGGGCAAATGC  <  AE015451/5943643‑5943410

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.