New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 2689525 = | 36 (0.880) | 3 (0.080) | 3/316 | NT | 9.0% | coding (955/2268 nt) | PP_2356 | putative Phytochrome family protein |
? | AE015451 | 2689657 = | 27 (0.700) | coding (823/2268 nt) | PP_2356 | putative Phytochrome family protein |
TCACCTGGGCTTCAGGCGGGGTCTGGCCGATCAGGTCACAGCGCTCGGCCGAGATCACTGCCGCGCCCTGCGCGTCGGCGAAGGCCAGCAGCACTTCAGGCAGGTCGCGCAGGCCGTCACTTACGCTGTCGTGGTCGGCCATGGACGAGATCATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAACCACGATCGACAGCGACATCGAAGCCAGCGTGCCCATGTTGCGCATGTACTGCAGGTGCACGGGCGATACGCTACGCAGCGCAGCAAAACTCATGTCCAGCGGCTTGCCGGTGCGCGGGTTGGTAGCGGG > AE015451/2689294‑2689753 | tCACCTGGGCTTCAGGCGGGGTCTGGCCGATCAGGTCACAGCGCTCGGCCGAGATCACTGCCGCGCCCTGCGCGTCGGCGAAGGCCAGCAGCACTTCAGGCAGGTCGCGCAGGCCGTCACTTACGCTGTCGTGGTCGGCCATGGACGAGATCATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACg > 1:287488/1‑236 (MQ=255) gCCGAGATCCCTGCCGCGCCCTGCGCGTCGGCGAAGGCCAGCAGCACTTCAGGCAGGTCGCGCAGGCCGTCACTTACGCTGTCGTGGTCGGCCATGGACGAGATCATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCg < 1:164941/236‑1 (MQ=255) aggcgcgcgagctgtaccgggtcacccgtatccgcgtgatcgaagatgccaactatcagccctcgccactgctgcccgctaccaacccgcgcaccggcaagccgctggacatgagttttgctgcgctgcgtagcgtatcgcccgtgcacctgcagtacatgcgcaacatggGCAc > 2:144679‑M1/172‑175 (MQ=255) cgcgCCCTGCGCGTCGGCGAAGGCCAGCAGCACTTCAGGCAGGTCGCGCAGGCCGTCACTTACGCTGTCGTGGTCGGCCATGGACGAGATCATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACCGCTCGCAgg > 2:164940/1‑194 (MQ=255) cgcgCCCTGCGCGTCGGCGAAGGCCAGCAGCACTTCAGGCAGGTCGCGCAGGCCGTCACTTACGCTGTCGTGGTCGGCCATGGACGAGATCATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGAtggt > 1:181682/1‑236 (MQ=255) cgcgagctgtaccgggtcaaccgtatccgcgtgatcgaagatgccaactatcagccctcgccactgctgcccgctaccaacccgcgcaccggcaagccgctggacatgagttttgctgcgcggcgtagcgtatcgcccgtgcacctgcagtacatgcgcaacatggGCACGCt > 2:47717‑M1/167‑173 (MQ=255) tgtaccgggtcaaccgtatccgcgtgatcgaagatgccaactatcagccctcgccactgctgcccgctaccaacccgcgcaccggcaagccgctggacatgagttttgctgcgctgcgtagcgtatcgcccgtgcacctgcagtacatgcgcaacatggGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGAt > 1:570508‑M1/160‑222 (MQ=255) cgTCGGCGAAGGCCAGCAGCACTTCAGGCAGGTCGCGCAGGCCGTCACTTACGCTGTCGTGGTCGGCCATGGACGAGATCATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGaaa < 1:633013/234‑1 (MQ=255) gTCGGCGAAGGCCAGCAGCACTTCAGGCAGGTCGCGCAGGCCGTCACTTACGCTGTCGTGGTCGGCCATGGACGAGATCATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTgcgg > 1:547287/1‑195 (MQ=255) ggCGAAGGCCAGCAGCACTTCAGGCAGGTCGCGCAGGCCGTCACTTACGCTGTCGTGGTCGGCCATGGACGAGATCATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTg < 1:59731/184‑1 (MQ=255) aGGCCAGCAGCACTTCAGGCAGGTCGCGCAGGCCGTCACTTACGCTGTCGTGGTCGGCCATGGACGAGATCATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCca > 1:87807/1‑235 (MQ=255) gCCAGCAGCCCTTCAGGCAGGTCGCGCAGTCCGTCCCTTACGCGGTCGTGGTCGGCCATGGACGAGATCATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTg < 2:99171/183‑1 (MQ=255) gcaggTCGCGCAGGCCGTCACTTACGCTGTCGTGGTCGGCCATGGACGAGATCATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAACCACg < 1:676331/236‑1 (MQ=255) gcgcAGGCCGTCACTTACGCTGTCGTGGTCGGCCATGGACGAGATCATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCt > 1:591108/1‑182 (MQ=255) cgcAGGCCGTCACTTACGCTGTCGTGGTCGGCCATGGACGAGATCATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAACCACGATCGACAg > 1:502037/1‑236 (MQ=255) ccaactatcagccctcgccactgctgcccgctaccaacccgcgcaccggcaagccgctggacatgagttttgctgcgctgcgtagcgtatcgcccgtgcacctgcagtacatgcgcaacatggGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGaaa > 2:259142‑M1/124‑198 (MQ=255) ggcACTTACGCTGTCGTGGTCGGCCATGGACGAGATCATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTGGCGCGTACTGGCATGGGACTCGGGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGt < 2:655064/173‑1 (MQ=255) gccgTCGTGGTCGGCCATGGACGAGATCATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCcac < 1:142082/190‑1 (MQ=255) tGTCGTGGTCGGCCATGGACGAGATCATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAACCACGATCGACAGCGACATCGAAGCCAGCg > 2:528152/1‑234 (MQ=255) tGGTCGGCCATGGACGAGATCATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCgg > 2:747795/1‑132 (MQ=255) tGGTCGGCCATGGACGAGATCATGCGTACGATGCGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAACCACGATCGACAGCGACATCGAAGCCAGCGTGCCCa > 1:338998/1‑235 (MQ=255) ggCCATGGACGAGATCATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAACCACGATCGACAGCGACATCGAAGCCAGCGTGCCCATGt > 2:495365/1‑233 (MQ=255) ggCCATGGACGAGATCATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAACCACGATCGACAGCGACATCGAAGCCAGCGTGCCCATGTTg < 1:383508/235‑1 (MQ=255) gagaTCATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTTCGGGTGCGCAGGTCCACCCGGCGTGGCTGTTGATGGTGGCAg > 2:25198/1‑156 (MQ=255) taTCATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCAcc < 2:70633/129‑1 (MQ=255) gcaccggcaagccgctggacatgagttttgctgcgctgcgtagcgtatcgcccgtgcacctgcagtacatgcgcaacatggGCAc > 2:508039‑M1/82‑85 (MQ=255) cATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAg > 2:411523/1‑159 (MQ=255) cATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAACCACGATCGACAGCGACATCGAAGCCAGCGTGCCCATGTTGCGCATGTACTGCAGGt > 1:340003/1‑236 (MQ=255) gTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAACCACGATCGACAGCGACATCGAAGCCAGCGTGCCCATGTTGCGCATGTACTGCAGGTGCACg > 1:648549/1‑236 (MQ=255) aCGATGCGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAACCACGATCGACAGCGACATCGAAGCCAGCGTGCCCATGTTGCGCATGTACTGCAGGTg < 2:338997/230‑1 (MQ=255) tgtgCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAACCACGATCGACAGCGACATCGAAGCCAGCGTGCCCATGTTGCGCATGTACTGCAGGTGCACGGGCGAt > 1:762916/1‑236 (MQ=255) tGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAACCACGATCGACAGCGACATCGAAGCCAGCGTGCCCATGTTGCGCATGTACTGCAGGTGCACGGGCGAtacgct > 1:755969/1‑236 (MQ=255) gcgcAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAACCACGATCGACAGCGACATCGAAGCCAGCGTGCCCATGTTGCGCATGTACTGCAGGTGCACGGGCGAtacgct < 2:762915/234‑1 (MQ=255) aGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCcaca > 1:89172/1‑145 (MQ=255) tCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAACCACGATCGACAGCGACATCGAAGCCAGCGTGCCCATGTTGCGCATGTACTGCAGGTGCACGGGCGATACGCTAcgcagcg > 1:746796/1‑234 (MQ=255) aaCAGCGTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAACCACGATCGACAGCGACATCGAAGCCAGCGTGCCCATGTTGCGCATGTACTGCAGGTGCACGGGCGATACGCTAcgcagcgcag < 1:236422/235‑1 (MQ=255) cgaaCTGGCCTGGGACTCGCGGGACTCTATCTGCAGCGACACCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCg < 2:413822/90‑1 (MQ=255) cgtGGGACTCGCGGGACTCTAGCTGCAGCGACAGCACGCGGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAACCACGATCGACAGCGACATCGAAGc < 2:79199/155‑1 (MQ=255) cacctgcagtacatgcgcaacatggGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAAGCACGATCGACAGCGACATCGAAGCCa < 1:441101‑M1/126‑1 (MQ=255) gcgGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAACCACGATCGACAGCGACATCGAAGCCAGCGTGCCCATGTTGCGCATGTACTGCAgg > 2:255723/1‑178 (MQ=255) gggACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAACCACGATCGACAGCGACATCGAAGCCAGCGTGCCCATGTTGCGCATGTACTGCAGGTGCACGGGCGATACGCTACGCAGCGCAGCAAAACTCATGTCCAGCGGCTTGCCGGTgcgc > 1:423980/1‑236 (MQ=255) tGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAACCACGATCGACAg > 2:560410/1‑122 (MQ=255) gCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAACCACGATCGACAGCGACATCGAAGCCAGCGTGCCCATGTTGCGCATGTACTGCAGGTGCACGGGCGATACGCTACGCAGCGCAGCAAACCTCATGTCCAGCGGCTTGCCGGTGCGCGGGTTGGCCGCggg > 2:248627/1‑235 (MQ=255) GCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAACCACGATCGACAGCGACATCGAAGCCAGCg < 2:754708‑M1/129‑1 (MQ=255) GCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAACCACGATCGACAGCGACATCGAAGCCAGCGTGCCCATGTTGCGCATGTACTGCAGGTGCCCGGGCGAtacgct < 2:659769‑M1/172‑1 (MQ=255) | TCACCTGGGCTTCAGGCGGGGTCTGGCCGATCAGGTCACAGCGCTCGGCCGAGATCACTGCCGCGCCCTGCGCGTCGGCGAAGGCCAGCAGCACTTCAGGCAGGTCGCGCAGGCCGTCACTTACGCTGTCGTGGTCGGCCATGGACGAGATCATGCGTACGATGTGCTGGCGCAGCGTCAACAGCTTGCGCGTACTGGCATGGGACTCGCGGGACTCTATCTGCAGCGACAGCACGCTGGCCAACAGCTCGCAGGCCGTGCGGGTGCGCAGGTCCACCGGGCGTGGCTGTTGATGGTGGCAGGAAATCAGCCCCCACAGCTGGCCGTCAACCACGATCGACAGCGACATCGAAGCCAGCGTGCCCATGTTGCGCATGTACTGCAGGTGCACGGGCGATACGCTACGCAGCGCAGCAAAACTCATGTCCAGCGGCTTGCCGGTGCGCGGGTTGGTAGCGGG > AE015451/2689294‑2689753 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |