New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5874548 =	44 (1.080)	3 (0.080)	3/314	NT	6.8%	intergenic (‑40/+108)	PP_5148/ilvA‑II	conserved membrane protein of unknown function/threonine deaminase
	?	AE015451	5874630 =	41 (1.070)					intergenic (‑122/+26)	PP_5148/ilvA‑II	conserved membrane protein of unknown function/threonine deaminase

AACGGCATGCTCACCAGGCACAGGCCCATCACCAACCAGACGAACACCAACGGCCGGCGCAGCAGCTTGGCGTAGGCTTCGGCATCGCCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCCGCCACC  >  AE015451/5874315‑5874776                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                     aaCGGCATGCTCACCAGGCACAGGCCCATCACCAACCAGACGAACACCAACGGCCGGCGCAGCAGCTTGGCGTAGGCTTCGGCATCGCCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGcttct                                                                                                                                                                                                                                      >  1:659042/1‑234 (MQ=255)    ggCATGCTCACCAGGCACAGGCCCATCACCAACCAGACGAACACCAACGGCCGGCGCAGCAGCTTGGCGTAGGCTTCGGCATCGCCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTcgc                                                                                                                                                                                                                                  <  1:596693/235‑1 (MQ=255)                       ggCCCATCACCAACCAGACGAACACCAACGGCCGGCGCAGCAGCTTGGCGTAGGCTTCGGCATCGCCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCa                                                                                                                                                                                                              >  1:541885/1‑236 (MQ=255)                                              acCAACGGCCGGCGCAGCAGCTTGGCGTAGGCTTCGGCATCGCCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCt                                                                                                                                                                                       <  1:182984/236‑1 (MQ=255)                                              acCAACGGCCGGCGCAGCAGCTTGGCGTAGGCTTCGGCATCGCCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCt                                                                                                                                                                                       <  1:639488/236‑1 (MQ=255)                                                  aCGGCCGGCGCAGCAGCTTGGCGTAGGCTTCGGCATCGCCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTcgcgcg                                                                                                                                                                                                                               >  1:72711/1‑190 (MQ=255)                                                   cggccggcGCAGCAGCTTGGCGTAGGCTTCGGCATCGCCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGcc                                                                                                                                                                                        >  1:700074/1‑230 (MQ=255)                                                                    tGGCGTAGGCTTCGGCATCGCCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTAtct                                                                                                                                                                                                      <  2:350308/199‑1 (MQ=255)                                                                       cggctgacgggcgcgtggtggcggggctgcaggtgccggaggacgaacgtcacctggggccggcagcgctggccaagatcgggtacccgtactgggacgagaccgaaaacccggcctacaaactgttcctgggctgagcggctaagctagggctgatggccctTTCGCGGGCt                                                                                                                                                                                                                             <  1:112610‑M1/10‑1 (MQ=255)                                                                            gacgggcgcgtggtggcggggctgcaggtgccggaggacgaacgtcacctggtgccggcagcgctggccaagatcggttacccgtactgggacgagaccgaaaacccggcctacaaactgttcctgggctgagcggctaagctagggctgatggccctTTCGCGGGCt                                                                                                                                                                                                                             <  1:728732‑M1/10‑1 (MQ=255)                                                                             acgggcgcgtggtggcggggctgcaggtgccggaggacgaacgtcacctggtgccggcagcgctggccaagatcggttacccgtactgggacgagaccgaaaacccggcctacaaactgttcctgggctgagcggctaagctagggctgatggccctTTCGCGGGCtt                                                                                                                                                                                                                            >  2:269547‑M1/158‑168 (MQ=255)                                                                               tCGGCATCGCCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCcgcg                                                                                                                                                       >  2:528848/1‑235 (MQ=255)                                                                                         ccTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATc                                                                                                                                            <  1:612402/236‑1 (MQ=255)                                                                                          cTGACGGCGCGCGCGCCAGGTACAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGc                                                                                                                                                                                         <  1:158144/190‑1 (MQ=255)                                                                                                      gcgcCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCt                                                                                                                                  >  2:651447/1‑233 (MQ=255)                                                                                                      gcgcCAGGCCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGGATCTCAGGCCTTGAg                                                                                                                                                                                           >  1:177905/1‑176 (MQ=255)                                                                                                         ccAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGcc                                                                                                                             <  1:225698/235‑1 (MQ=255)                                                                                                            ggaggacgaacgtcacctggtgccggcagcgctggccaagatcggttacccgtactgggacgagaccgaaaacccggcctacaaactgttcctgggctgagcggctaagctagggctgatggccctTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCa                                                                                                                                                               >  1:480950‑M1/127‑198 (MQ=255)                                                                                                            ggaggacgaacgtcacctggtgccggcagcgctggccaagatcggttacccgtactgggacgagaccgaaaacccggcctacaaactgttcctgggctgagcggctaagctagggctgatggccctTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCa                                                                                                                                                               <  2:480949‑M1/72‑1 (MQ=255)                                                                                                                     acgtcacctggtgccggcagcgctggccaagatcggttgcccgtactgggacgagaccgaaaacccggcctacaaactgttcctgggctgagcggctaagctagggctgatggccctTTCGCGGGc                                                                                                                                                                                                                              >  2:118949‑M1/118‑126 (MQ=255)                                                                                                                      gCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCt                                                                                                                                                                                       <  2:700073/164‑1 (MQ=255)                                                                                                                         aGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCg                                                                                                                            <  2:263717/220‑1 (MQ=255)                                                                                                                           gCCCAGGGCGCCCAGAACCAGCAGCGCGGTGGCGATGATGTGCCGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGa                                                                                                                                                                                            <  1:158765/154‑1 (MQ=255)                                                                                                                           gCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCt                                                                                                                                      >  2:483685/1‑208 (MQ=255)                                                                                                                                   cgcCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAgg                                                                                                    >  2:602123/1‑234 (MQ=255)                                                                                                                                                   cgcgGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGACCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGttt                                                                                                         >  1:79299/1‑213 (MQ=255)                                                                                                                                                     cgGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTc                                                                                 <  1:264442/235‑1 (MQ=255)                                                                                                                                                      ggTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCgg                                                                                        <  1:272899/227‑1 (MQ=255)                                                                                                                                                      ggTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTccc                                                                               <  1:106137/236‑1 (MQ=255)                                                                                                                                                       gTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCa                                                                              >  1:701669/1‑236 (MQ=255)                                                                                                                                                                     cAGGGTCTGGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTgc                                                                                                                                                                                     <  2:238138/119‑1 (MQ=255)                                                                                                                                                                         gTCTTGAGCGTGGTCAGGTGTTCCATCGCTCGGTCGTCCGTAAACTGGCATTTTGCGGTAGCTTCTCCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGa                                                                                                                                                                                            <  2:374154/108‑1 (MQ=255)                                                                                                                                                                           cTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTccc                                                                               >  1:504181/1‑215 (MQ=255)                                                                                                                                                                              gAGCGTGGTCAGTTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAg                                                                                                                       <  1:65924/172‑1 (MQ=255)                                                                                                                                                                                gCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGt                                                                            <  2:611884/213‑1 (MQ=255)                                                                                                                                                                                gCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGt                                                                            >  1:611885/1‑213 (MQ=255)                                                                                                                                                                                gCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAg                                                      >  1:281864/1‑235 (MQ=255)                                                                                                                                                                                       cAGGTGTTCCATCTCTCGGTGGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAAcc                                                                  >  2:371331/1‑216 (MQ=255)                                                                                                                                                                                       cAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTa                                                                           >  2:335203/1‑207 (MQ=255)                                                                                                                                                                                       cAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTg                                                 >  2:730528/1‑233 (MQ=255)                                                                                                                                                                                       cAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGcc                                               <  1:528849/235‑1 (MQ=255)                                                                                                                                                                                                  tctctcGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGa                                                                                                                                                                                            >  2:409729/1‑83 (MQ=255)                                                                                                                                                                                                  tctctcGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGa                                                                                                                                                                                            <  1:409730/83‑1 (MQ=255)                                                                                                                                                                                                       cGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGcc                                                        >  2:40532/1‑210 (MQ=255)                                                                                                                                                                                                        ggTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCg                             >  1:92605/1‑236 (MQ=255)                                                                                                                                                                                                          tcgtcCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGtc                           >  1:517783/1‑236 (MQ=255)                                                                                                                                                                                                                ttAAACTGGCATTTTGCGGTAGCTTCTTcgc                                                                                                                                                                                                                                  >  2:147592/1‑31 (MQ=255)                                                                                                                                                                                                                           ttttGCGGTAGCTTCTTCGCGGGCTTACCCGCTcc                                                                                                                                                                                                                   >  1:551521/1‑35 (MQ=255)                                                                                                                                                                                                                           ttttGCGGTAGCTTCTTCGCGGGCTTACCCGCTcc                                                                                                                                                                                                                   <  2:551520/35‑1 (MQ=255)                                                                                                                                                                                                                           ttttGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAg                                                                                                            >  1:610345/1‑138 (MQ=255)                                                                                                                                                                                                                           ttttGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGcc          >  1:369211/1‑236 (MQ=255)                                                                                                                                                                                                                                  gTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCgg                                                                                        <  2:541884/151‑1 (MQ=255)                                                                                                                                                                                                                                    ggccctTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTTTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCCGccac   <  2:578441‑M1/228‑1 (MQ=255)                                                                                                                                                                                                                                    aGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCCGccacc  <  1:651448/235‑1 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                     AACGGCATGCTCACCAGGCACAGGCCCATCACCAACCAGACGAACACCAACGGCCGGCGCAGCAGCTTGGCGTAGGCTTCGGCATCGCCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCTGCCAAGGTATCTCAGGCCTTGAGGCCTGCGCAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCCGCCACC  >  AE015451/5874315‑5874776

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.