New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	682075 =	14 (0.340)	4 (0.110)	4/308	NT	24.4%	coding (1198/1944 nt)	PP_0584	Methyl‑accepting chemotaxis transducer
	?	AE015451	682089 =	12 (0.320)					coding (1184/1944 nt)	PP_0584	Methyl‑accepting chemotaxis transducer

AGGCGATCAACGCTGTGTACCGCCGCATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGCGGATTTCCAGGTTGCGGGTCAGGTCACCCTCACCTTGGGCAATGTCTTCCAGGCCATTGGTGACGCTGTTGATCGGGCGCAC  >  AE015451/681906‑682318                                                                                                                                                                                        |                                                                                                                                                                                                                                      tgacccgcaacctggaaatccgcggccgcgacgaaaccgcgcaactggccaactggttcaaccagttcctcggtgccattcgcagcctgatccagcacatcggcactgctgccagcaagatcctcagcacgtccagcagctcgacccgcgtctccagtgacatggccgaggcggccggccgccTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAg                                                                                                                                                                                         >  1:410821‑M2/184‑230 (MQ=255)                      gccgcATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGAt                                                                                                                                                                 <  1:212500/233‑1 (MQ=255)                                                                     ctcggtgccattcgcagcctgatccagcacatcggcactgctgccagcaagatcctcagcacgtccagcagctcgacccgcgtctccagtgacatggccgaGGCGCCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTg                                                                                                                                                           >  2:410820‑M1/102‑192 (MQ=255)                                                                           cGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGtt                                                                                                         <  1:187455/236‑1 (MQ=255)                                                                                       ctgatccagcacatcggcactgctgccagcaagatcctcagcacgtccagcagctcgacccgcgtctccagtgacatggccgaggcggccggccgccTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTg                                                                                                                                                                               >  2:462352‑M2/98‑154 (MQ=255)                                                                                          atccagcacatcggcactgctgccagcaagatcctcagcacgtcccgcagcccgacccgcgtctccagtgacatggccgaggcggccggccgccGCGGCCATGTCACTggatacgcgcggcg                                                                                                                                                                                                            >  2:262714‑M2/95‑117 (MQ=255)                                                                                             cagcacatcggcactgctgccagcaagatcctcagcacgtccagcagctcgacccgcgtctccagtgacatggccgaggcggccgggcgccTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAg                                                                                                                                   >  2:410820‑M2/92‑192 (MQ=255)                                                                                                                 cagcaagatcctcagcacgtccagcagctcgacccgcgtctccagtgacatggccgaGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAg                                                                                                                                                     >  2:462352‑M1/58‑154 (MQ=255)                                                                                                                    cGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGCGGATTTCCAGGTTGCGggt                                                                 >  1:304873/1‑235 (MQ=255)                                                                                                                      gTGGCGACCATTTCGTGGAATGCGGTGGAACACATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCGCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGCGGATTTCCAGGTTGCGggtca                                                               <  1:189976/235‑1 (MQ=255)                                                                                                                      gTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGCGGATTTCCAGGTTGCGggtc                                                                <  2:304872/234‑1 (MQ=255)                                                                                                                          cGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGtt                                                                                                         <  1:54877/189‑1 (MQ=255)                                                                                                                           gACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTg                                                                                                        >  1:18545/1‑189 (MQ=255)                                                                                                                           ctcagcacgtccagcagctcgacccgcgtctccagtgacatggccgaGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGCGGATTTCCAGGTTGCGggtca                                                               >  1:410821‑M1/48‑230 (MQ=255)                                                                                                                                    ggggAATGCGGTGGAAACCATGTCCGCGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGCGGATTTCCAGGTTGCGggtcaggtca                                                          <  1:177917/224‑1 (MQ=255)                                                                                                                                        aaTGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGCGGATTTCCAGGTTGCGggtca                                                               <  2:409282/217‑1 (MQ=255)                                                                                                                                              gTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGCGGATTTCCAGGTTGCg                                                                    <  2:18545/206‑1 (MQ=255)                                                                                                                                              cgccgcgcgtatccagtgacatggccgcGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGGGCTGCGGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGAt                                                                                                                                                        >  2:262714‑M1/29‑122 (MQ=255)                                                                                                                                                        ggTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCgg                                                                                        <  1:60587/175‑1 (MQ=255)                                                                                                                                                          tCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGCGGATTTCCAGGTTGCGGGTCAGGTCACCCTCACCTTGGGCAATGTCTTCCAGGccct                           >  1:36962/1‑233 (MQ=255)                                                                                                                                                                       gcTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCTCGGCCGCGGATTTCCAGGGTGCgg                                                                   >  1:82069/1‑182 (MQ=255)                                                                                                                                                                                  gccgccTCGGCCATGTCACTGGAGACGCGGGGCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGCGGATTTCCAgg                                                                         <  2:79125‑M2/159‑1 (MQ=255)                                                                                                                                                                                  GCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGCGGa                                                                                 <  2:672681‑M1/157‑1 (MQ=255)                                                                                                                                                                                  GCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGCGGATTTCCAGGTTGCGGGTCAGGTCACCCTCACCTTGGGCAATGTCTTCCAGGCCATTGGTGACGCTGTTGATCGGGCGCAc  >  1:192226‑M1/1‑236 (MQ=255)                                                                                                                                                                                   ccgccTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGt                                                                                                                           <  1:58965‑M2/109‑1 (MQ=255)                                                                                                                                                                                   CCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGt                                                                                                                           <  2:58965‑M1/114‑1 (MQ=255)                                                                                                                                                                                        |                                                                                                                                                                                                                                      AGGCGATCAACGCTGTGTACCGCCGCATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGCGGATTTCCAGGTTGCGGGTCAGGTCACCCTCACCTTGGGCAATGTCTTCCAGGCCATTGGTGACGCTGTTGATCGGGCGCAC  >  AE015451/681906‑682318

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.