New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2050559 =	34 (0.830)	3 (0.090)	3/262	NT	13.5%	intergenic (‑52/+123)	PP_1824/PP_1825	Smr domain protein/conserved exported protein of unknown function
	?	AE015451	2050669 =	12 (0.380)					intergenic (‑162/+13)	PP_1824/PP_1825	Smr domain protein/conserved exported protein of unknown function

TCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATGCTGGACAACGGTTTGTTGGCGTTGAGTTCCTGCAGGGCAGGGTAGTTGCCTAGCAGCCCGGCGACGCCGGC  >  AE015451/2050497‑2050879                                                                                                                                                                             |                                                                                                                                                                                                                   tcgtcTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTCCGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCGCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCcgcg                                                                                                                                                     <  1:643086/236‑1 (MQ=255)         cATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGGCTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGc                                                                                                                                                                                              <  1:150377/187‑1 (MQ=255)                                        cgcgACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAg                                                                                                                                                                                   <  1:561513/167‑1 (MQ=255)                                         gcgACTGTGGGGCGGTGTGCGGCCTGGGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAAc                                                                                                                                                                                                          <  2:220752/143‑1 (MQ=255)                                                                     CGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACCgcagca                                                                                                <  1:217556‑M1/221‑1 (MQ=255)                                                                     CGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCAGCAATCGTGCTTCTGCATCAGGTGCGGCGACAGGTTAAGCTccc                                                                                                                                                            <  2:601367‑M1/161‑1 (MQ=255)                                                                            CTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGGTACGCAAAACCATCAATCGTGCTTCTTCAGCAGGGGCGGCGACAGGCTAAGCTCCCGCCCGCcgcgcc                                                                                                                                                <  2:122357‑M1/166‑2 (MQ=255)                                                                                     TGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTGCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGc                                                                                                                                             <  1:751316‑M1/160‑1 (MQ=255)                                                                                          tCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATGCTGGACAACGGtt                                                            >  2:451097‑M1/2‑236 (MQ=255)                                                                                               CCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCCGCCACAGCAGCAACAAGCCAGCCACGGTGAGGACGCTGGa                                                                    <  2:260189‑M1/223‑1 (MQ=255)                                                                                                     gggATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAACCCATCAATCGTGCTTCTTCATCAGGTCCGGCGACCGGTTCAGCTCCCGCCCGCCGCGCAAGCGGATACGGCTGCGCCGCCAGAAacg                                                                                                                    >  2:7565/1‑169 (MQ=255)                                                                                                     ggcaccccgccgtcttcgggctctgtgacatccccgtaggagcgggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTgcg                                                                                                                                >  2:505295‑M2/73‑157 (MQ=255)                                                                                                     ggcaccccgccgtcttcgggctctgtgacatccccgtaggagcgggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTgcg                                                                                                                                <  1:505296‑M2/85‑1 (MQ=255)                                                                                                         ccccgccgtcttcgggctctgtgacatccccgtaggagcgggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATGCTGGACAACGGTTTGTTGGCGTTGAGt                                              >  1:420272‑M2/69‑235 (MQ=255)                                                                                                             acaGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATGCTGGACAACGGTTTGTTGGCGTTGAGTTCCt                                          <  1:748573/235‑1 (MQ=255)                                                                                                               agagCCCGAAGACGGCGGGGTGCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACgg                                                                                 <  2:477061/194‑1 (MQ=255)                                                                                                                     cGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAgg                                                                            <  2:284397/193‑1 (MQ=255)                                                                                                                     cGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAgg                                                                            >  1:284398/1‑193 (MQ=255)                                                                                                                     cGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATGCTGGACAACGGTTTGTTGGCGTTGAGTTCCTgcagggcag                                 >  1:670228/1‑236 (MQ=255)                                                                                                                      gAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACgg                                                                                 >  2:748572/1‑187 (MQ=255)                                                                                                                      gAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCACGCCCGCGGCGCAAGCGGag                                                                                                                                         >  1:66141/1‑130 (MQ=255)                                                                                                                                          aggagcgggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATGCTGGACAACGGTTTGTTGGCGTTg                                                 <  2:559216‑M2/164‑1 (MQ=255)                                                                                                                                           ggagcgggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATGCTGGACAACGGTTTGTTGGCGTTGAGTTCCTGCAGGGCAGGGt                              >  2:296703‑M2/35‑217 (MQ=255)                                                                                                                                                  gttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATGCTGGACAACGGTTTGTTGGCGTTGAGTTCCTGCAGGGCAGGGTAGTTGCCTAGCAGCCCGGCGACGCCg    >  1:308147‑M2/28‑236 (MQ=255)                                                                                                                                                  gttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATGCTGGACAACGGTTTGTTGGCGTTGAGTTCCTGCAGGGCAGGGTAGGTGCCTAGCAGCCCg             >  1:214992‑M2/28‑227 (MQ=255)                                                                                                                                                      acccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATGCTGGACAACGGTTTGTTGGCGTTGAGTTCCTGCAGGGCAGGGTAGTTGCCTAGCAGCCCGGCGACGCCGGc  >  1:285458‑M2/24‑234 (MQ=255)                                                                                                                                                                  gcccgcacaggTTACGCAAAACCCTCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATGCTGGACAACGGt                                                             <  1:241314‑M2/152‑1 (MQ=255)                                                                                                                                                                             |                                                                                                                                                                                                                   TCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATGCTGGACAACGGTTTGTTGGCGTTGAGTTCCTGCAGGGCAGGGTAGTTGCCTAGCAGCCCGGCGACGCCGGC  >  AE015451/2050497‑2050879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.