New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 229089133 (0.810)3 (0.080) 3/320 NT 8.2% coding (242/960 nt) PP_2018 BNR domain protein
?AE015451 = 2290917 36 (0.920)coding (268/960 nt) PP_2018 BNR domain protein

ATACTCCACCGAATCGGCCAAGGCCAGCCAAAGCCTGTTGATCGACGCCACCCATGCCGGCAAGCGCCTGGTGGTGGTGGGTGATCGCGGCCACATTCTGTTCTCCGACGACCAGGGCAGTACCTGGACCCAGGCTCGGGTACCCACCCGGCAATTGCTCACTGCCGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAACCACCGATGGTGGGCAGCACTGGCAGGATGTGGCCGAGCGGCTGGACAACCCGGACCAGCTGCACCTGAACGGTATCGCCCAAGTGCGCGATGCC  >  AE015451/2290688‑2291138
                                                                                                                                                                                                                                     |                                                                                                                                                                                                                             
aTACTCCACCGAATCGGCCAAGGCCAGCCAAAGCCTGTTGATCGACGCCACCCATGCCGGCAAGCGCCTGGTGGTGGTGGGTGATCGCGGCCACATTCTGTTCTCCGACGACCAGGGCAGTACCTGGACCCAGGCTCGGGTACCCACCCGGCAATTGCTCACTGCCGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCAccgac                                                                                                                                                                                                                          >  1:611398‑M2/1‑230 (MQ=255)
                                                          ggCAAGCGCCTGGTGGTGGTGGGTGATCGCGGCCACATTCTGTTCTCCGACGACCAGGGCAGTACCTGGACCCAGGCTCGGGTACCCACCCGGCAATTGCTCACTGCCGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCg                                                                                                                                                                >  1:198311/1‑235 (MQ=255)
                                                                                    tCGCGGCCACATTCTGTTCTCCGACGACCAGGGCAGTACCTGGACCCAGGCTCGGGTACCCACCCGGCAATTGCTCACTGCCGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGCCGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGcc                                                                                                                                                                                   >  1:264753/1‑190 (MQ=255)
                                                                                    tCGCGGCCACATTCTGTTCTCCGACGACCAGGGCAGTACCTGGACCCAGGCTCGGGTACCCACCCGGCAATTGCTCACTGCCGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGc                                                                                                                                        >  2:741476/1‑233 (MQ=255)
                                                                                               ttCTGTTCTCCGACGGCCAGGGCAGTACCTGGACCCAGGCTCGGGTACCCACCCGGCAATTGCTCACTGCCGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGcc                                                                                                                             <  2:646264/233‑1 (MQ=255)
                                                                                                         cgacgaCCAGGGCAGTACCTGGACCCAGGCTCGGGTACCCACCCGGCAATTGCTCACTGCCGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATg                                                                                                                <  1:588644/236‑1 (MQ=255)
                                                                                                          gacgacCAGGGCAGTACCTGGACCCAGGCTCGGGTACCCACCCGGCAATTGCTCACTGCCGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGCTGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATg                                                                                                                >  1:216507/1‑235 (MQ=255)
                                                                                                                 aGGGCAGTACCTGGACCCAGGCTCGGGTACCCACCCGGCAATTGCTCACTGCCGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGCGAAGc                                                                                                                                                                           >  2:97333/1‑169 (MQ=255)
                                                                                                                                cccAGGCTCGGGTACCCACCCGGCAATTGCTCACTGCCGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGaaa                                                                                                 >  1:66922/1‑228 (MQ=255)
                                                                                                                                cccAGGCTCGGGTACCCACCCGGCAATTGCTCACTGCCGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAACCACCGAt                                                                                         >  1:611197/1‑236 (MQ=255)
                                                                                                                                   aGGCTCGGGTACCCCCCCGGCAATTGCTCACCGCCGTGGTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGc                                                                                                                                        <  2:208783/186‑1 (MQ=255)
                                                                                                                                      cTCGGGTACCCACCCGGCAATTGCTCACTGCCGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCAccgacggcccagccacgcttgtcgtcgaggaaaa                                                                                                                                                                                             <  1:387866‑M2/130‑35 (MQ=255)
                                                                                                                                      cTCGGGTACCCACCCGGCAATTGCTCACTGCCGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCAccgacggcccagccacgcttgtcgtcgaggaaaa                                                                                                                                                                                             >  2:387865‑M2/1‑96 (MQ=255)
                                                                                                                                      cTCGGGTACCCACCCGGCAATTGCTCACTGCCGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGcc                                                                                                                             <  2:412952/194‑1 (MQ=255)
                                                                                                                                      cTCGGGTACCCACCCGGCAATTGCTCACTGCCGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGt                                                                                                                           >  1:208784/1‑196 (MQ=255)
                                                                                                                                       tCGGGTACCCACCCGGCAATTGCTCACTGCCGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAac                                                                                                >  1:12420/1‑222 (MQ=255)
                                                                                                                                        cGGGTACCCACCCGGCAATTGCTCACTGCCGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCCCGGCTTTGCCGt                                                                                                                           >  2:398204/1‑194 (MQ=255)
                                                                                                                                        cGGGTACCCACCCGGCAATTGCTCACTGCCGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTgg                                                                                                    >  1:263185/1‑217 (MQ=255)
                                                                                                                                         gggTACCCACCCGGCAATTGCTCACTGCCGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAACCACCGATGGTGGgca                                                                                 <  1:191692/235‑1 (MQ=255)
                                                                                                                                                    cGGCAATTGCTCACTGCCGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAACCACCGATGGTGGGCAGCACTGGCAGGa                                                                     >  1:702713/1‑236 (MQ=255)
                                                                                                                                                              tCACTGCCGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAACCACCGATGGTggg                                                                                   <  2:198310/212‑1 (MQ=255)
                                                                                                                                                              tCACTGCCGTGTTTTTCCTCCACGCCAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGcc                                                                                                                             <  2:73836/170‑1 (MQ=255)
                                                                                                                                                                aCTGCCGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAACCACCGATGGTGGGCAGCACTGGCAGGATGTGGCCGAg                                                           >  2:602579/1‑234 (MQ=255)
                                                                                                                                                                    ccGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAACCACCGATGGTGGGCAGCACTGGCAGGATGTGGCCGAGCGGCt                                                      <  1:541971/235‑1 (MQ=255)
                                                                                                                                                                    ccGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAACCACCGATGGTGGGCAGCACTGGCAGGATGTGGCCGAGCGGCt                                                      <  1:469538/235‑1 (MQ=255)
                                                                                                                                                                          ttttCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAACCACCGATGGTGGGCAGCACTGGCAGGATGTGGACGAGCGGCTGGACAAc                                               >  1:720897/1‑236 (MQ=255)
                                                                                                                                                                           tttCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAACCACCGATGGTGGGCAGCACTGGCAGGATGTGGCCGAGCGGCt                                                      <  1:475968/228‑1 (MQ=255)
                                                                                                                                                                            ttCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAACCACCGATGGTGGGCAGCACTGGCAGGATGTGGCCGAGCGGCTGGACAAccc                                             <  1:741477/236‑1 (MQ=255)
                                                                                                                                                                                 cgacgaCAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAACCACCGATGGTGGGCAGCACTGGCAGGATGTgg                                                                >  2:546146/1‑212 (MQ=255)
                                                                                                                                                                                 cgacgaCAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAACCACCGATGGTGGGCAGCACTGGCAGGATGTgg                                                                <  1:546147/212‑1 (MQ=255)
                                                                                                                                                                                 cgacgaCAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTCGCTCGATGCCACCTTCCTCGACGCCCCGCACGGCtt                                                                                                                                 >  2:89411/1‑147 (MQ=255)
                                                                                                                                                                                           cGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAACCACCGATGGTGGGCAGCACTGGCAGGATGTGGCCGAGCGGCTGGACAACCCGGACCAGCTGCACCt                              <  1:602580/236‑1 (MQ=255)
                                                                                                                                                                                             tGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAACCACCGATGGTGGGCAGCACTGGCAGGATGTGGCCGAGCGGCTGGACAACCCGGACCAGCTGCACCTGa                            >  1:493353/1‑236 (MQ=255)
                                                                                                                                                                                                   ggCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAACCACCGATGGTGGGCAGCACTGGCAGGATGTGGCCGAGCGGCTGGACAACCCGGAcccg                                      >  2:594134/1‑218 (MQ=255)
                                                                                                                                                                                                      cGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAACCACCGATGGTggg                                                                                   <  2:239433/172‑1 (MQ=255)
                                                                                                                                                                                                       gTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGAAAGCAGTTCGAAGACCGCGCCCGTGAAGCCCCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAACCACCGATGGTGGGCAGCACTGGCAgg                                                                      <  1:226376/184‑1 (MQ=255)
                                                                                                                                                                                                           gCCATGACGCGCAGATCCTCGCCGGCAccgaccgcccagccgcgcttgtcgtcgaggaaaaacacggcagtgagcaattgccgggtgggtacccgagc                                                                                                                                                        >  1:598634‑M2/1‑27 (MQ=255)
                                                                                                                                                                                                            ccATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAACCACCGATGGTGGGCAGCACTGGCAGGATGTGGCCGAGCGGCTGGACAACCCGGACCAGCTGCACCTGAACGGTATCGCCCaa              >  1:310148/1‑235 (MQ=255)
                                                                                                                                                                                                                        gATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAACCACCGATGGTGGGCAGCACTGGCAGGATGTGGCCGAGCGGCTGGACAACCCGGACCAGCTGCACCTGAACGGTATCGCCCAAGTGCGCGATGcc  <  1:399602/235‑1 (MQ=255)
                                                                                                                                                                                                                              cGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAACCACCGATGGTGGGCAGCACTGGc                                                                         >  2:433652/1‑158 (MQ=255)
                                                                                                                                                                                                                                 cAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCCCCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAACCACCGATGGTGGGCAGCACTGGCAGGATGTGGCCGAGCGGCt                                                      <  1:212078/174‑1 (MQ=255)
                                                                                                                                                                                                                                     |                                                                                                                                                                                                                             
ATACTCCACCGAATCGGCCAAGGCCAGCCAAAGCCTGTTGATCGACGCCACCCATGCCGGCAAGCGCCTGGTGGTGGTGGGTGATCGCGGCCACATTCTGTTCTCCGACGACCAGGGCAGTACCTGGACCCAGGCTCGGGTACCCACCCGGCAATTGCTCACTGCCGTGTTTTTCCTCGACGACAAGCGTGGCTGGGCCGTCGGCCATGACGCGCAGATCCTCGCCAGCACCGACGGCGGCGCCACCTGGAGCAAGCAGTTCGAAGACCTCGCCCGTGAAGCACCCTTGCTCGATGTCACCTTCCTCGACGCCCAGCACGGCTTTGCCGTGGGGGCCTATGGTGCCTTGCTGGAAACCACCGATGGTGGGCAGCACTGGCAGGATGTGGCCGAGCGGCTGGACAACCCGGACCAGCTGCACCTGAACGGTATCGCCCAAGTGCGCGATGCC  >  AE015451/2290688‑2291138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.