New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3638812	21 (0.510)	3 (0.080)	3/318	NT	12.8%	coding (808/993 nt)	PP_3205	Fumarylacetoacetate hydrolase family protein
	?	AE015451	= 3638821	21 (0.540)					coding (817/993 nt)	PP_3205	Fumarylacetoacetate hydrolase family protein

AGGCCTGGCGCGACGGCCGGGTGCACTTGCCGCTGCACGTGCACTGGAACGGCGAGTGGTTCGGCCATCCCCATGGCGGCGCCATGCACTTCGGTTTCCACCAGTTGATTGCCCATGCGGCGCTGACGCGACGCTTGAGTGCGGGCACGCTACTGGGCTCCGGCACCGTGTCCAACGCCGAGCGCAGCGTGGGCTCGGCGTGCATCGCCGAGCGCCGCGCCATCGAAACCATCGCCTGCGGTGCGCCACGCACGGCCTTCATGCGCTTTGGCGACCGGGTGCGCATGGAGGCTCGCGGGCCCGAGGGCGAGGTGCTGTTTGGGGCCATTGACCAGCGCGTCGTGCGGGGAGGCTGGCCATGCGAGTGATGGTCACCGGGGCAAATGGCTT  >  AE015451/3638630‑3639019                                                                                                                                                                                                |                                                                                                                                                                                                       aGGCCTGGCGCGACGGCCGGGTGCACTTGCCGCTGCACGTGCACTGGAACGGCGAGTGGTTCGGCCATCCCCATGGCGGCGCCATGCACTTCGGTTTCCACCAGTTGATTGCCCATGCGGCGCTGACGCGACGCTTGAGTGCGGGCACGCTACTGGGCTCCGGCACCGTGTCCAACGCCGAGCGCAGCGTGGGCTCGGCGTGCATCGCCGAGCGCCGCGCCATCGAAACCATCGc                                                                                                                                                             <  1:575673/235‑1 (MQ=255)                 ccGGGTGCACTTGCCGCTGCACGTGCACTGGAACGGCGAGTGGTTCGGCCATCCCCATGGCGGCGCCATGCACTTCGGTTTCCACCAGTTGATTGCCCATGCGGCGCTGACGCGACGCTTGAGTGCGGGCACGCTACTGGGCTCCGGCACCGTGTCCAACGCCGAGCGCAGCGTGGGCTCGGCGTGCATCGCCGAgcgccgcg                                                                                                                                                                             >  2:590209/1‑203 (MQ=255)                   gggTGCACTTGCCGCTGCACGTGCACTGGAACGGCGGGTGGTTCGGCCATCCCCATGGCGGCGCCATGCACGTCGGTTTCCACCAGTTGATTGCCCATGCGGCGCTGACGCGACGCTTGAGTGCGGGCACGCTACTGGGCTCCGGCACCGTGTCCAACGCCGAGCGCAGCGTGGGCTCGGCGTGCATCGCCGAGCGCCGCGCCATCGAAACCATCGCCTGCGGTGCGCcacg                                                                                                                                              <  1:176788/232‑1 (MQ=255)                                 cTGCACGTGCACTGGAACGGCGAGTGGTTCGGCCATCCCCATGGCGGCGCCATGCACTTCGGTTTCCACCAGTTGATTGCCCATGCGGCGCTGACGCGACGCTTGAGTGCGGGCACGCTACTGGGCTCCGGCACCGTGTCCAACGCCGAGCGCAGCGTGGGCTCGGCGTGCATCGCCGAGCGCCGCGCCATCGAAACCa                                                                                                                                                                 >  1:659737/1‑199 (MQ=255)                                                       aGTGGTTCGGCCATCCCCATGGCGGCGCCATGCACTTCGGTTTCCACCAGTTGATTGCCCATGCGGCGCTGACGCGACGCTTGAGTGCGGGCACGCTACTGGGCTCCGGCACCGTGTCCAACGCCGAGCGCAGCGTGGGCTCGGCGTGc                                                                                                                                                                                             >  2:524745/1‑149 (MQ=255)                                                        gTGGTTCGGCCATCCCCATGGCGGCGCCATGCACTTCGGTTTCCACCAGTTGATTGCCCATGCGGCGCTGACGCGACGCTTGAGTGCGGGCACGCTACTGGGCTCCGGCACCGTGTCCAACGCCGAGCGCAGCGTGGGCTCGGCGGGCATCGCCGAGCGCCGCGCCATCGAAACCATCGCCTGCGGTGCGCCACGCACGGCCTTCATgc                                                                                                                                >  1:83598/1‑209 (MQ=255)                                                         tGGTTCGGCCATCCCCATGGCGGCGCCATGCACTTCGGTTTCCACCAGTTGATTGCCCATGCGGCGCTGACGCGACGCTTGAGTGCGGGCACGCTACTGGGCTCCGGCACCGTGTCCAACGCCGAGCGCAGCGTGGGCTCGGCGTGCATCGCCGAgcgc                                                                                                                                                                                 <  1:680536/159‑1 (MQ=255)                                                            ttCGGCCATCCCCATGGCGGCGCCATGCACTTCGGTTTCCACCAGTTGATTGCCCATGCGGCGCTGACGCGACGCTTGAGTGCGGGCACGCTACTGGGCTCCGGCACCGTGTCCAACGCCGAGCGCAGCGTGGGCTCGGCGTGCATCGCCGAGCGCCGCGCCATCGAAACCATCGCCTGCGGTGCGCCACGCACGGCCTTCATGCGCTTTGGc                                                                                                                        <  1:594625/213‑1 (MQ=255)                                                                                  ccATGCACTTCGGTTTCCACCAGTTGATTGCCCATGCGGCGCTGACGCGACGCTTGAGTGCGGGCCCGCTACTGGGCTCCGGCCCCGTGTCCCACGCCGAGCGCAGCGTGGGCCCGGCGTGCCTCGCCGAGCGCCGCCCCCTc                                                                                                                                                                        >  2:24471/1‑143 (MQ=255)                                                                                  ccATGCACTTCGGTTTCCACCAGTTGATTGCCCATGCGGCGCTGACGCGACGCTTGAGTGCGGGCACGCTACTGGGCTCCGGCACCGTGTCCAACGCCGAGCGCAGCGTGGgctcggcgttggacacggtgccggagcccagtagcgtgcccgcactcaagcgtcgcgtcagcgccg                                                                                                                                      <  1:449028‑M2/177‑67 (MQ=255)                                                                                  ccATGCACTTCGGTTTCCACCAGTTGATTGCCCATGCGGCGCTGACGCGACGCTTGAGTGCGGGCACGCTACTGGGCTCCGGCACCGTGTCCAACGCCGAGCGCAGCGTGGgctcggcgttggacacggtgccggagcccagtagcgtgcccgcactcaagcgtcgcgtcagcgccg                                                                                                                                      >  2:449027‑M2/1‑111 (MQ=255)                                                                                  ccATGCACTTCGGTTTCCACCAGTTGATTGCCCATGCGGCGCTGACGCGACGCTTGAGTGCGGGCACGCTACTGGGCTCCGGCACCGTGTCCAACGCCGAGCGCAGCGTGGGCTCGGCGTGCATCGCCGAGCGCCGCGCCATCGAAACCATCGCCTGCGGTGCGCCACGCACGGCCTTCATGCGCTTTGGCGACCGGGTgcgc                                                                                                            >  1:700278/1‑203 (MQ=255)                                                                                                    accaGTTGATTGCCCATGCGGCGCTGACGCGACGCTTGAGTGCGGGCACGCTACTGGGCTCCGGCACCGTGTCCAACGCCGAGCGCAGCGTGGGCTCGGCGTGCATCGCCGAGCGCCGCGCCATCGAAACCATCGCCTGCTGTGCGCCACGCACGGCCTTCATGCGCTTTGGCGACCGGGTGCGCATGGAGGCTCGCGGGCCCGAGGGCGAGTGGCTGTTTGGGGCCATTGACCa                                                          >  1:418926/1‑235 (MQ=255)                                                                                                    accaGTTGATTGCCCATGCGGCGCTGACGCGACGCTTGAGTGCGGGCACGCTACTGGGCTCCGGCACCGTGTCCAACGCCGAGCGCAGCGTGGGCTCGGCGTGCATCGCCGAGCGCCGCGCCATCGAAACCATCGCCTGCGGTGCGCCACGCACGGCCTTCATGCGCTTTGGCGACCGGGTGCGCATGGAGGCTCGCGGGCCCGAGGGCGAGGTGCTGTTTGGGGCCATTGACCAg                                                         <  1:728088/236‑1 (MQ=255)                                                                                                     ccaGTTGATTGCCCATGCGGCGCTGACGCGACGCTTGAGTGCGGGCACGCTACTGGGCTCCGGCACCGTGTCCAACGCCGAGCGCAGCGTGGGCTCGGCGTGCATCGCCGAGCGCCGCGCCATCGAAACCATCGCCTGCGGTGCGCCACGCACGGCCTTCATGCGCTTTGGCGACCGGGTGCGCATGGAGGCTCGCGGGGCCGAGGGCgcg                                                                                 >  1:203541/1‑209 (MQ=255)                                                                                                       aGTTGATTGCCCATGCGGCGCTGACGCGACGCTTGAGTGCGGGCACGCTACTGGGCTCCGGCACCGTGTCCAACGCCGAGCGCAGCGTGGGCTCGGCGTGCATCGCCGAGCGCCGCGCCATCGAAACCATCGCCTGCGGTGCGCCACGCACGGCCTTCATGCGCTTTGGCGACCGGGTg                                                                                                               >  2:211242/1‑179 (MQ=255)                                                                                                         ttGATTGCCCATGCGGCGCTGACGCGACGCTTGAGTGCGGGCACGCTACTGGGCTCCGGCACCGTGTCCAACGCCGAGCGCAGCGTGGGCTCGGCGTGCATCGCCGAGCGCCGCGCCATCGAAACCATCGCCTGCGGTGCGCCACGCACGGCCTTCATGCGCTTTGGCGACCGGGTGCGCATGGAGGCTCGCGGGCCCGAGGGCGAGGTGCTGtt                                                                         <  2:369529/215‑1 (MQ=255)                                                                                                              tGCCCATGCGGCGCTGACGCGACGCTTGAGTGCGGGCACGCTACTGGGCTCCGGCACCGTGTCCAACGCCGAGCGCAGCGTGGGCTCGGCGTGCATCGCCGAGCGCCGCGCCATCGAAACCATCGCCTGCGGTGCGCCACGCACGGCCTTCATGCGCTTTGGCGACCGGGTGCGCATGGAGGCTCGCGGGCCCGAgg                                                                                      <  1:498363/197‑1 (MQ=255)                                                                                                                cccATGCGGCGCTGACGCGACGCTTGAGTGCGGGCACGCTACTGGGCTCCGGCACCGTGTCCAACGCCGAGCGCAGCGTGGgctcggcgttggacacggtgccggagcccagtagcgtgcccgcactcaagcgtcgcgtcagcgccgcatgggcaatcaact                                                                                                                       >  1:470130‑M2/1‑81 (MQ=255)                                                                                                                      cggcgCTGACGCGACGCTTGAGTGCGGGCACGCTACTGGGCTCCGGCACCGTGTCCAACGCCGAGCGCAGCGTGGGCTCGGCGTGCATCGCCGAGCGCCGCGCCATCGAAACCATCGCCTGCGGTGCGCCACGCACGGCCTTCATGCGCTTTGGCGACCGGGTGCGCATGGAGGCTCGCGGGCCCGAGGGCGAGGTGCTGTTTGGTGCCATTGACCAGCGCGTCGTGCGGGGAg                                         >  1:190691/1‑234 (MQ=255)                                                                                                                                            tGCGGGCACGCTGCTGGGCTCCGGCACCGGGTCCACCGCCGAGCGCAGCGTGGGCTCGGCGTGCATCGCCGAGCGCCGCGCCATCGAAACCATCGCCTGCGGTGCGCCACGCACGGCCTTCATGCGCTTTGGCGACCGGGTGCGCATGGAGGCTCGCGGGCCCGAGGGCGAg                                                                                 <  2:203540/172‑1 (MQ=255)                                                                                                                                            tGCGGGCACGCTACTGGGCTCCGGCACCGTGTCCAACGCCGAGCGCAGCGTGGGCTCGGCGTGCATCGCCGAGCGCCGCGCCATCGAAACCATCGCCTGCGGTGCGCCACGCACGGCCTTCATGCGCTTTGGCGACCGGGTGCGCATGGAGGCTCGCGGGCCCGAGGGCGAGGTGCTGTTTGGGGCCATTGACCAGCGCGTCGTGCGGGGAGGCTGGCCATGCGAGTGATGGTCa                  <  1:537548/235‑1 (MQ=255)                                                                                                                                                   aCGCTACTGGGCTCCGGCACCGTGTCCAACGCCGAGCGCAGCGTGGGCTCGGCGTGCATCGCCGAGCGCCGCGCCATCGAAACCATCGCCTGCGGTGCGCCACGCACGGCCTTCATGCGCTTTGGCGACCGGGTGCGCATGGAGGCTCGCGGGCCCGAGGGCGAGGGGCTGTTTGGGGCCATTGACCGGCGCGTCGTGCGGGGTGGCTGGCCATGCGAGTGATGGTc                   >  1:585683/1‑227 (MQ=255)                                                                                                                                                                      ccGTGTCCAACGCCGAGCGCAGCGTGGGCTCGGCGTGCATCGCCGAGCGCCGCGCCATCGAAACCATCGCCTGCGGTGCGCCACGCACGGCCTTCATGCGCTTTGGCGACCGGGTGCGCATGGAGGCTCGCGGGCCCGAGGGCGAGGGGCTGTTTGGGGCCATTGACCAGCGCGTCGTGCGGGGAg                                         >  2:487907/1‑186 (MQ=255)                                                                                                                                                                                      gcgcAGCGTGGGCTCGGCGTGCATCGCCGAGCGCCGCGCCATCGAAACCATCGCCTGCGGTGCGCCACGCACGGCCTTCATGCGCTTTGGCGACCGGGTGCGCATGGAGGCTCGCGGGCCCGAGGGCGAGGTGCTGTTTGGGGCCATTGACCAGCGCGGCGTGCGGGGAGGCGGGCCATGCGAGTGATGGGCACCGGGGCAAATGGCtt  >  1:180488/1‑209 (MQ=255)                                                                                                                                                                                             gTGGGCTCGGCGTGCATCGCCGAGCGCCGCGCCATCGAAACCATCGCCTGCGGTGCGCCACGCACGGCCTTCATGCGCTTTGGCGACCGGGTGCGCATGGAGGCTCGCGGGCCCGAGGGCGAGGTGCTGTTTGGGGCCATTGACCAGCGCGTCGTGCGGGGAGGCTGGCCATGCGAGTGATGGTCACCg               <  2:432363/189‑1 (MQ=255)                                                                                                                                                                                                |                                                                                                                                                                                                       AGGCCTGGCGCGACGGCCGGGTGCACTTGCCGCTGCACGTGCACTGGAACGGCGAGTGGTTCGGCCATCCCCATGGCGGCGCCATGCACTTCGGTTTCCACCAGTTGATTGCCCATGCGGCGCTGACGCGACGCTTGAGTGCGGGCACGCTACTGGGCTCCGGCACCGTGTCCAACGCCGAGCGCAGCGTGGGCTCGGCGTGCATCGCCGAGCGCCGCGCCATCGAAACCATCGCCTGCGGTGCGCCACGCACGGCCTTCATGCGCTTTGGCGACCGGGTGCGCATGGAGGCTCGCGGGCCCGAGGGCGAGGTGCTGTTTGGGGCCATTGACCAGCGCGTCGTGCGGGGAGGCTGGCCATGCGAGTGATGGTCACCGGGGCAAATGGCTT  >  AE015451/3638630‑3639019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.