Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	2038213	2038420	208	11 [10]	[9] 11	[rffE]	[rffE]

GCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTGGGGCGGGGTTTCAGGAAAGTCTGACGTGCGGAATGTGCATTCCAAGGCAAATCTCTTCGTCGTGATTGTTGACTGTTGTTGGGGGGGCACGCGGAAGGGGGGCTGC  >  AE015451/2037977‑2038274                                                                                                                                                                                                                                            |                                                               taagagacAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTGGGGCGGGGTTTCAGGAAAGTCTGACGTGCGGAATGTGCATTCCa                                                                <  1:356250/229‑1 (MQ=255)    cGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTAGGGCGGGGTTTCAGGAAAGTCTGACGTGCGGAATGTGCATTCCAAg                                                              <  1:190288/235‑1 (MQ=255)                                              cAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTGGGGCGGGGTTTCAGGAAAGTCTGACGTGCGGAATGTGCATTCCAAGGCAAATCTCTTCGTCGTGATTGTTGACTGTTGTTGGGGGGGCa                   <  1:515633/236‑1 (MQ=255)                                                           tCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCGGTGACGTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTGGGGCGGGGTTTCAGGAAAGTCTGACGTGCGGAATGTGCATTCCAAGGCAAATCTCTTCGTCGTGAttgt                                       <  2:78805/203‑1 (MQ=255)                                                                                                          gTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTGGGGCGGGGTTTCAGGAAAGTCTGACGTGCGGAATGTGCATTCCAAGGCAAATCTCTtcg                                                 <  1:603219/146‑1 (MQ=255)                                                                                                             aTCCCTGAGGCATTTCCCCGCCAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTGGGGCGGGGTTTCAGGAAAGTCTGACGTGCGGAATGTGCATTCCAAGGCAAATCTCtt                                                   <  1:270503/141‑1 (MQ=255)                                                                                                                              ccGACAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTGGGGCGGGGTTTCAGGAAAGTCTGACGTGCGGAATGTGCATTCCAAGGCAAATCTCTTCGTCGTGATTGTTGACTGTTGTTGGGGGGGCACGCGGAAg           <  2:290195/164‑1 (MQ=255)                                                                                                                                                        cgcgTAGGATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTGGGGGGGGGTTTCAGGAAAGTCTGACGTGCGGAATGTGCATTCCAAGGCAAATCTCTTCGTCGTGATTGTTGACTGTTGTTGGGGGGGCACGCGGAAGGGGGgctgc  <  1:150544/147‑1 (MQ=255)                                                                                                                                                               gATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTGGGGCGGGGTTTCAGGAAAGTCTGACGTGCGGAATGTGCATTCCAAGGCAAAtc                                                       >  1:104553/1‑87 (MQ=255)                                                                                                                                                               gATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTGGGGCGGGGTTTCAGGAAAGTCTGACGTGCGGAATGTGCATTCCAAGGCAAAtc                                                       <  2:104553/87‑1 (MQ=255)                                                                                                                                                                aTAGTTCGCTTGTTTGGCCTAGTTGAAGAGGTGGGGCGTGGTGTCAGGAAAGTCTGACGTGCTGAATGTGCATTCCAAGGCAAATCTCTTCGTCGTGAtt                                         <  2:23531/100‑1 (MQ=255)                                                                                                                                                                                                                                            |                                                               GCTCGGCCAGACCGAAGTCTGCCCGCGTACGACTGCCATGACAGGCAAGTCAGGTAGCTCGCATCAGGTTCTCACACCCGGTCACCAACATGGCGACCCTGTGACGTTATCCCTGAGGCATTTCCCCGACAATTCAGCTGCTTCTGACTGGCGCGTAGGATAGTTCGCTTGGTTGTCCGAGTTGAAGAGGTGGGGCGGGGTTTCAGGAAAGTCTGACGTGCGGAATGTGCATTCCAAGGCAAATCTCTTCGTCGTGATTGTTGACTGTTGTTGGGGGGGCACGCGGAAGGGGGGCTGC  >  AE015451/2037977‑2038274

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑