| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,555,059 | T→C | 8.7% | D43G (GAC→GGC) | ddpB ← | D‑ala‑D‑ala transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,555,059 | 0 | T | C | 8.7% | 1979.1 / 17.7 | 838 | D43G (GAC→GGC) | ddpB | D‑ala‑D‑ala transporter subunit |
| Reads supporting (aligned to +/- strand): ref base T (452/235); new base C (3/112); total (485/353) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.22e-42 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 847 total aligned reads displayed.
ACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGAT > CP009273/1554910‑1555208 | ctTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCAc > 1:698619/1‑150 (MQ=255) tCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGGGAATATTTTCCACGATAGCATCGCTGGCGCGGTCAccc > 2:582713/1‑150 (MQ=255) tCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCAccc > 1:606736/1‑150 (MQ=255) tCCAGCACCGGACGCCCGGCACGAATGGACGTTCCCAGGTCACCATGAAACAGGCCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGCCCAGTCCCAGCTGCTGGGGAATATTTTCCACGAGAGGATCACTAGCGCAGTCAcac > 2:511586/1‑148 (MQ=255) ccAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCTGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCAcc < 1:442258/148‑1 (MQ=255) ccAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCCGTTGCTGGCGAATATTTTTCACGATAGCATCGCTGGCGCGGTCACCCg > 2:1114100/1‑150 (MQ=255) ccAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCAc < 2:155547/147‑1 (MQ=255) cACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAg < 1:565210/150‑1 (MQ=255) cACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAg < 2:472655/150‑1 (MQ=255) cACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAg > 1:303685/1‑150 (MQ=255) cccGGACGCCCGGTACGAATGGATGTCCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGAAAAA‑CTGTCCATACAGTGGCTGGCCCAGCCCCAGTTGCTGGCAAATATTTCCCACGATAGCACCGCTGGCGCGGTCACCCGCCAGt < 2:128704/149‑1 (MQ=255) cGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTaa > 1:383398/1‑150 (MQ=255) gggTACGAATGGATGTCCCAAGGTCCCCAGAAAACAGGCCGCGGACGTGGCGGAAAAC‑CTGTACATACAGGGGCTGGCCCAGTCCCAGTTGCTGGCGAATATTTCCCACGATAGCATCGCTGGCGCGGTCCCCCGCCAGTAACCGCGCCg < 2:113569/149‑1 (MQ=255) cGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCg > 1:362608/1‑150 (MQ=255) tagaaagggATTTCCCAAGGCCACCATAAAACGGGTCGCTGACGT‑GGGGTAAAACCTGTACATCCAGTGGCTGGTCCTGCCCCGTTTGCTGGGGAATTTTTCCCACGATAGCACCGGGGGCGCGGCCCCCCGCCAGTAACCGCGCCGGAt < 2:340379/143‑1 (MQ=255) gAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCAc > 1:474152/1‑150 (MQ=255) gATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTTCACGATAGCATCCCTCGCGCGGTCACCCCCCAGTAACCGCGCCGGATCACCAggg > 2:826411/1‑150 (MQ=255) aTGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGa > 1:793517/1‑150 (MQ=255) aTGTTCCAAGGTCACCATGAAACAGGTCGCTGAGGTAGCGGTAAAA‑CTGTACATACGGTGGGTGGTCCAGTCCCAGTGGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGa < 1:74864/150‑1 (MQ=255) ttCCAAGGTCCCCATGAAACTGGTCGCTGACGTGGGGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCGTGTTGCTGGCGAATATTTCCCACGATGGCATCGTGGGCGGGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCa < 1:602139/150‑1 (MQ=255) cccAGGTCACCATGAACCGGGTCGCTGACGTAGCGGTAAAC‑TTGAACATACGGTGGCGGGCCCAGTCCCAGTTGCTGGCGAATATTTCCCACGATGGCATCGCTGGCGGGGTCCCCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGa < 1:992575/150‑1 (MQ=255) cccAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGAt > 1:661395/1‑146 (MQ=255) ccagcacacaATAAAACAGGTCGCTGACGTAGCGATAAAA‑CTGTAAATACAGTGGCGGGCCCAGCCCCAGTTGCGGGAAAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGAt < 1:1065812/144‑1 (MQ=255) ccAGGTCCCCAGAAAACAGGTCGCTGACGTGGCGGAAAAA‑CTTTACATACGGTGGCTGGTCCAGTCCCAGTTGCGGGAGAATATTTCCCACGATAGCTTCGCGGGCGCGGTCCCCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGAt < 2:645224/150‑1 (MQ=255) ccAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGAt > 1:1094809/1‑150 (MQ=255) ccAGGCCCCCATAAAACAGGCCGCTGACGAGGCGATAAAA‑CTTTACATACGGTGGCTGTTCCCGCCCCAGTTGCGGGCAAATATTTCCCACGATGGCCGCGCGGGCGGGGCCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGAt < 2:528711/150‑1 (MQ=255) cAGCTCCCCATAAAAGAGGTCGCTGCGGTGGCGTAAAAA‑CTGTACATACGGTGCCGGATCCAGTCCCGGTTGCGGGCGAATTTTTTCCAGGATAGGATCGGTGGCGGGCTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATg < 1:1121291/150‑1 (MQ=255) aGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCCGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGc > 2:1077843/1‑150 (MQ=255) aGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGc > 2:716261/1‑150 (MQ=255) ggTCACAATGAAACAGGTCGCTGACGTAGCGGTAAAC‑CTGTACATACGGTGGCTGGCCCAGCCCCATTTGCTGGCAAATATTTCCCACGATAGCCCCGCGGGCGCGGTCCCCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCg < 2:195108/150‑1 (MQ=255) cATGAAACAGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGataa > 1:1179708/1‑150 (MQ=255) cATGAAACAGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCCGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCAACCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGataa > 2:973688/1‑150 (MQ=255) aTGAAACAGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGGTCAGATGCGAGataa > 2:757087/1‑149 (MQ=255) aaaCGGGTCGCTGACGGAGCGGTAAAA‑CTGTACATACGGTGGCTGGTCCAGCCCCGGTTGCTGGCAAATATTTCCCACGATAGCATCGCGGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGAtaataa < 1:90252/149‑1 (MQ=255) aaCAGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAAc < 2:698525/150‑1 (MQ=255) acgggTCGCTGACGTAGGGGTAAAA‑CTGTACATACAGTGGCTGGCCCAGCCCCGGTTGCTGGCAAATTTTTCCCACGATAGCACCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACg < 1:854275/147‑1 (MQ=255) aGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGt > 1:320512/1‑149 (MQ=255) ggTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCCGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACgga > 2:873300/1‑147 (MQ=255) cGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAAAGTAATCa > 2:371473/1‑150 (MQ=255) gCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCAc < 1:874200/150‑1 (MQ=255) gACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCCGTTGCTGGCGAATATTTTCCACGATAGCATCGCTCGCGCGGGCACCCGCCAGTAACCGCGCCCGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACg > 2:899199/1‑148 (MQ=255) gACGTAGCGGAAAAA‑CTGTACAGACAGTGGCTGTTCCAGTCCCAGTTGCTGGCGAATATTTCCCACGATAGCACCGCTGGCGCGGTCCCCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCa < 1:643532/150‑1 (MQ=255) cGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCAAGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGa > 1:846152/1‑150 (MQ=255) cGTAGCGGAAAAA‑CTGTCCATACGGGGGCTGCCCCAGCCCCAGTTGCGGGCGAATTTTTCCCACGATAGCATCGCGGGCGCGGCCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGa < 2:681392/150‑1 (MQ=255) gTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGAc > 2:412338/1‑150 (MQ=255) tAGGGGAAAAA‑CTTTACATCCAGTGGCTGGTCCCGCCCCGGTTGCTGGCGAATATTTTCCCGGATACCCCCGCTGGCGCGGCCCCCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGAcg < 2:24243/150‑1 (MQ=255) tAGCGGAAAAA‑CTGTACATACAGTGGCTGGTCCAGCCCCAGTTGCTGGCGAATATTTCCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGAcg < 1:490264/150‑1 (MQ=255) aGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGAcgc > 2:208570/1‑150 (MQ=255) ggTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTTCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAAAGTAATCACGCAGAcgcccg > 2:285376/1‑150 (MQ=255) gTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGAcgcccgc > 1:202289/1‑150 (MQ=255) aaaa‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGcca > 1:1006503/1‑150 (MQ=255) aaa‑CTGTACATACAGTGGCTGGGCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGccac > 1:929042/1‑150 (MQ=255) aa‑CTGTACATACAGTGGCTGGTGCAGTCCCAGTTGCCGGCGAATATTTTCCACGAGAGCACCCCCGGCCCGGTCACCCGCCAGCAACCGCGCCCGCCCACCACGGATCAAATGGGTGCTAATAAACGTAATCACGCAGACGCCCGccacc > 2:60451/1‑150 (MQ=255) tacataagGTGGCGGGTCCAGCCCCAGTTGCGGGCAAATATTTCCCACGATAGCACCGCGGGCGCGGCCCCCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAg < 1:283019/150‑1 (MQ=255) atacgGTGGCTGGCCCGGCCCCAGTGGCGGGAAAATTTTTCCCACGAAAGCACCGCGGGCGCGGCCCCCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCAc < 2:625726/150‑1 (MQ=255) atacaGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTaa > 1:949646/1‑122 (MQ=255) atacaGTGGCTGGGCCAGTCCCAGTTGCTGGCGAATATTTTTCACGATAGCAACGCTGGCGCGGGCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCAc > 2:805499/1‑150 (MQ=255) tacgGTGGCTGGCCCAGCCCCAGTTGCTGGCAAATTTTTCCCACGATAGCTCCGCGGGCGCGGCCCCCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCAcc < 1:81890/150‑1 (MQ=255) acaGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCAc > 2:946860/1‑148 (MQ=255) cggTGGCTGGCCCAGCCCCGGTGGCTGGCAAATATTTTCCACGATAGCATCGCGGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCa < 1:517523/147‑1 (MQ=255) aGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGGAATCACGCAGACGCCCGCCACCACGAGCACCAGc > 1:397776/1‑150 (MQ=255) ggCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGcccc > 2:734810/1‑150 (MQ=255) gTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCcag > 1:123116/1‑148 (MQ=255) gTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCcag > 1:114369/1‑148 (MQ=255) gTCCAGCCCCAGTTGCGGGCAAATATTTCCCACGAAAGCATCGCGGGCGCGGCCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCcagca < 1:677636/150‑1 (MQ=255) ccAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCagcagc > 2:1095237/1‑150 (MQ=255) cAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCg > 1:268374/1‑150 (MQ=255) gTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGtt > 1:428933/1‑150 (MQ=255) gTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGt > 1:218222/1‑149 (MQ=255) gTTGCTGGCAATTATTTTCCACGATAGCCCCGCGGGCGGGGCCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTa < 2:312020/150‑1 (MQ=255) ttGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTa > 1:508667/1‑149 (MQ=255) tGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTaa > 2:791261/1‑149 (MQ=255) gCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGCTAATAAACGCAATCACGCAGACGCCAGACACCACGAGCACCAGACCCCAGCAGGGTTGGCGTaaaa > 2:1044919/1‑150 (MQ=255) gCTGGCGAACATTTTCCACGACAGCATCGCTGGCGCGTACACCCGCCAGTAACCTCGCCGCATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGTCACCACGAGCACCATCCCCCAGCAGCGTCGGCGTgaat > 2:84685/1‑149 (MQ=255) gCTGGCAAATTTTTCCCACGATGGCACCGCTGGCGGGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTaaa < 1:413825/149‑1 (MQ=255) cTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTaaaa > 2:1012697/1‑149 (MQ=255) gggCAAATTTTTCCCACGATAGCACCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATa < 1:16221/149‑1 (MQ=255) gAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTc > 1:586681/1‑149 (MQ=255) atatTTTCCAGGATAGCATCGTGGGCGCGTTCCCCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAg < 1:970737/150‑1 (MQ=255) atatTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTc > 1:733859/1‑147 (MQ=255) ttcccAGGATAGCGCCGCGGCCGCGTTCCCCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAg < 2:929042/146‑1 (MQ=255) cACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCAc > 2:1057436/1‑150 (MQ=255) cACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCAc > 1:1048803/1‑150 (MQ=255) cACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCAc > 1:939168/1‑150 (MQ=255) aCGATAGCATCGCGGGCGCGGCCCCCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACg < 1:622856/150‑1 (MQ=255) aCGATAGCAGCGGGGGCGGGGTCCCCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACg < 2:490419/150‑1 (MQ=255) cGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGt > 2:390239/1‑150 (MQ=255) cGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGt > 1:332351/1‑150 (MQ=255) aTAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTa > 1:539923/1‑150 (MQ=255) tAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTAt > 2:444013/1‑150 (MQ=255) aaGCTTCGCGGGCGCGGCCCCCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTAt < 2:661395/149‑1 (MQ=255) gCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTAtt > 2:1179764/1‑149 (MQ=255) gCATCGCGGGCGCGGCCCCCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTAttt < 1:716261/150‑1 (MQ=255) aTCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTAc > 2:223428/1‑150 (MQ=255) aTCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTAc > 2:264401/1‑150 (MQ=255) gCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTACTCa > 2:169266/1‑150 (MQ=255) gCTGGCGCGCTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTACTCa < 1:236327/150‑1 (MQ=255) cTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTACTCAt > 1:107273/1‑150 (MQ=255) gcgGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGtat < 2:1143255/150‑1 (MQ=255) ggTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGtatt > 2:559112/1‑149 (MQ=255) | ACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAA‑CTGTACATACAGTGGCTGGTCCAGTCCCAGTTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGAT > CP009273/1554910‑1555208 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |