New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	15387 =	NA (NA)	5 (0.060)	5/268	NT	31.2%	noncoding (1/1345 nt)	IS186	repeat region
	?	CP009273	= 454251	11 (0.140)					intergenic (+95/‑93)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La

CGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTATTACGCCTGATA‑TGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCT  >  CP009273/15240‑15534                                                                                                                                                    |                                                                                                                                                       cgcgCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTcc                                                                                                                                                      <  2:1068562/150‑1 (MQ=255) cgcgCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTcc                                                                                                                                                      <  2:432354/150‑1 (MQ=255)       cAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTGACTcccccaaa                                                                                                                                                >  2:711445/1‑145 (MQ=255)        aaaGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAg                                                                                                                                                <  2:1382486/149‑1 (MQ=255)                 cttTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCT‑AAC‑t                                                                                                                                      <  2:802414/148‑1 (MQ=255)                    tGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCT‑AAC‑TTaa                                                                                                                                   <  1:190148/148‑1 (MQ=255)                      aTGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCCCCTAAACGCT‑CAC‑TTAAAGGt                                                                                                                               >  2:835819/1‑150 (MQ=255)                      aTGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCCTAAACGCT‑AACTTTAAggg                                                                                                                                >  1:933809/1‑150 (MQ=255)                       tGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCCCCTAAACGCC‑AAA‑TTAAGGGtg                                                                                                                              >  1:843766/1‑149 (MQ=255)                        ggTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCCATAAACGCT‑AAC‑TTAAGGGGtg                                                                                                                             >  1:53648/1‑150 (MQ=255)                         gtgtGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCT‑AAC‑TTAAGGGTtg                                                                                                                             <  1:60870/149‑1 (MQ=255)                            tgAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCCCCAAGAGCT‑AAC‑TTAAAGGGTGTggg                                                                                                                         >  1:415257/1‑149 (MQ=255)                              aagaagTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACCCCCACAAACGCT‑AAC‑TTAAGGGGTGTGGTAt                                                                                                                       >  1:418438/1‑150 (MQ=255)                              aagaagTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTa                                                                                                                        <  1:186782/149‑1 (MQ=255)                               agaagTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTAtt                                                                                                                      <  1:1363084/150‑1 (MQ=255)                               agaagTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTAtt                                                                                                                      <  1:686953/150‑1 (MQ=255)                               agaagTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTAtt                                                                                                                      <  1:711445/150‑1 (MQ=255)                                  agTTTTTTGGCGGACTGACCCGCTTACCCCCCCAAAAGCCTGGCCGGGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTATTACg                                                                                                                   <  2:397279/150‑1 (MQ=38)                                       tttGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGAAACTCCCACAAGCGCT‑GAC‑TTAAGGGCTGTGGCTTTACggccgt                                                                                                              >  2:576575/1‑145 (MQ=255)                                        ttGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTATTACGCCTGa                                                                                                              <  2:353886/149‑1 (MQ=255)                                         tGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCCCTAAGCGCT‑AAC‑TTAAAGGGTGTGGGGTTACGCCTGgta                                                                                                            >  1:467695/1‑150 (MQ=255)                                           acgacCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCCCTAAGCGCT‑AAC‑TTTAGGGGTGTGGGATTTCGCCTGata‑t                                                                                                          >  1:697296/1‑149 (MQ=255)                                             gacCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCCCCAAACGCT‑AAC‑TTAAGGGGTGTGGGATTACGCCTGAta‑ttat                                                                                                       >  1:815032/1‑150 (MQ=255)                                               ccTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTATTACGCCTGATA‑TGAttt                                                                                                     <  1:348410/150‑1 (MQ=255)                                                  gACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTAACTTCCCAAAACGCC‑CACTTTAAGGGTGTTGGT‑TTAAGCCCGGTA‑TGAtttt                                                                                                    >  2:614233/1‑147 (MQ=255)                                                     ccGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTATTACGCCTGATA‑TGATTTAACGTg                                                                                               <  2:1082451/150‑1 (MQ=255)                                                           aCCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCT‑AAC‑TTAATGGTTGTGGTATTACGCCTGATA‑TGATTTAACGTGCCGAt                                                                                          <  2:257739/149‑1 (MQ=255)                                                           aCCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACCCCCCTAAACGCC‑AAC‑TTAAGGGGTGTGGGATTTCGCCCGGTA‑TGATTTAACGTGCCGAt                                                                                          >  2:1198384/1‑149 (MQ=255)                                                           aCCTCCCAAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATAACTCCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTATTGCGCCTGATA‑TGATTTAACGTGCCGAt                                                                                          <  2:1257094/149‑1 (MQ=255)                                                                cccAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTATTACGCCTGATA‑TGATTTAACGTGCCGATGAAtt                                                                                     <  1:1342325/149‑1 (MQ=255)                                                                     aaGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTATTACGCCTGATA‑TGATTTAACGTGCCGATGAATTACtctc                                                                               <  1:1047517/150‑1 (MQ=255)                                                                        ccTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTATTACGCCTGATA‑TGATTTAACGTGCCGATGAATTACTCTCACg                                                                            <  2:198807/150‑1 (MQ=255)                                                                         cTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCCCTAAGCGCT‑AAC‑CTAAGGGGTGGGGTATTACGCCTGATA‑TGATTTTAAGTGTCGACGAATTAATCTCACg                                                                            >  2:190895/1‑149 (MQ=37)                                                                                     aGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACCCCCCTAAGAGCC‑AAC‑TCAAAGGGTGTGGGATTATGGCTGATA‑AGATTTTAAATGCCGGTGAAATATTATCACGATAAATGGTAAGc                                                               >  2:398078/1‑150 (MQ=255)                                                                                            ggTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTATTACGCCTGATA‑TGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTc                                                          <  2:295125/148‑1 (MQ=255)                                                                                               aaaaaTAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCCCTAAGCGCT‑AAC‑TTAAAGGGTGTGGGGTTTTGCCTGATA‑TGATTTTACGTGCCGATGAAATAATCTCCCGATAAATGGTCAGCAAtttttggc                                                     >  1:1077318/1‑144 (MQ=255)                                                                                                aaaaTAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTATTACGCCTGATA‑TGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGccc                                                    <  1:1158426/150‑1 (MQ=255)                                                                                                   aTAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTTACACCCCTAAACGCG‑AAC‑TTTAAGGGTGTGGGTTTAGGCCTGGTATTGTTTTAAC‑TGCCGGAGAATTAATCTCTCCATAACTAGTCAGCAAATCTGGGCCcta                                                 >  1:866942/1‑150 (MQ=255)                                                                                                   aTAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTATTACGCCTGATA‑TGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCata                                                 <  1:230773/150‑1 (MQ=255)                                                                                                           cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCCCTAAACGCT‑AAC‑TTAAGGGGTGTGGTGTTATGCCTGATA‑TGATTTTACGTGCCGATGAATTATTCTCACCATAAATTGTCAGCAAATTTGGCCCATATTTGTAAg                                         >  2:1372251/1‑150 (MQ=255)                                                                                                            gTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTATTACGCCTGATA‑TGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGc                                        <  1:190895/150‑1 (MQ=255)                                                                                                               gAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCCCTAAACGCT‑AAA‑TTTAGGGGTGTGGGATTTCGCCTGATA‑TGATTTTAACTGCCGGTGAATTTCTCTCCCGATAAATTGGCAGCAATTTTTGCCCCTATTTGTaaagcc                                      >  1:508574/1‑145 (MQ=255)                                                                                                               gAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTATTACGCCTGATA‑TGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGccc                                      <  2:459045/149‑1 (MQ=255)                                                                                                                    tatGCGAGCACCTGTAAAGTGGCGGGGGGCACTCCCCCAAACGCC‑AAC‑TTATGGGGTGGGGGTTTATGCCCGGTA‑TGATTTAAAGTGGCGGTGAAATAATCTCACGATAACTGGGCAGCAATTCTTGCCCATCTTGGTTAGCCCgaaga                                 >  2:1082614/1‑149 (MQ=255)                                                                                                                     atGCGAGCACCTGTAAAGTGGCGGGGGTCACCCCCCTAAATGCTAAAT‑TTAAGGGTT‑TGGTATTATGCCCGGTA‑TTATTTTAACTGCCGCGGAAATAATTTCCCGATAACTCGTCAGCAAATCTGGGCCCTATTTGTAAGCCCgaagaaa                               >  2:1418383/1‑149 (MQ=255)                                                                                                                        cGAGCACCTGTAAAGTGGCGGGGGTCACTCCCCTAAGCGCT‑AAC‑TTAAAGGGTGTGGGGTTACGCCCGATA‑TGATTTTAAGTGCCGGTGAAATAATCTCCCCATAACTGGTCAGCAAATTTTGCCCCTATTTGTAAACCCGAAGAACTg                             >  1:1015020/1‑149 (MQ=255)                                                                                                                         gAGCACCTGTAAAGTGGCGGGGGGCAATCCCCTAAGCGCG‑AAC‑ATAAAGGGGGGGGTGTTAAACCCGATA‑TTATTTAAAGTGCCGATGAAATACTCTCACGAAAAAAGGTCAGAAAATTTGGCCCCTATTTGTAAACCCgaagaaaagg                            >  2:50356/1‑145 (MQ=255)                                                                                                                         gAGCACCTGTAAAGTGGCGGGGAGCCCTCCCCCAAACGCT‑TAC‑TTTACGGTTGTGGGATTAAGCCTGATA‑TGATTTTATGGGTCGGTGAATTATTCTCACGAGAAATGGGCAGCAATTCTGGCCCATATTTGTTAACCCGAAAAACTggg                           >  1:269996/1‑149 (MQ=255)                                                                                                                           gCACCTGTAAAGTGGCGGGGATCACACCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTATTACGCCTGATA‑TGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATa                         <  2:219640/150‑1 (MQ=255)                                                                                                                            cACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTATTACGCCTGATA‑TGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATAc                        <  2:415257/150‑1 (MQ=255)                                                                                                                                           ggggATCACTCCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTATTACGCCTGATA‑TGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGc         >  2:536019/1‑150 (MQ=34)                                                                                                                                           ggggATCACTCCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTATTACGCCTGATA‑TGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGc         <  2:815032/150‑1 (MQ=34)                                                                                                                                                  aCTCCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTATTACGCCTGATA‑TGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGct  <  2:851388/150‑1 (MQ=31)                                                                                                                                                    |                                                                                                                                                       CGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCT‑AAC‑TTAAGGGTTGTGGTATTACGCCTGATA‑TGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCT  >  CP009273/15240‑15534

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.