| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,555,013 | T→C | 9.6% | G58G (GGA→GGG) | ddpB ← | D‑ala‑D‑ala transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,555,013 | 0 | T | C | 9.6% | 569.9 / 3.0 | 218 | G58G (GGA→GGG) | ddpB | D‑ala‑D‑ala transporter subunit |
| Reads supporting (aligned to +/- strand): ref base T (121/64); new base C (2/28); total (124/94) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.90e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 221 total aligned reads displayed.
AGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTG > CP009273/1554864‑1555162 | agGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGt > 1:1304581/1‑150 (MQ=255) ccAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑t > 1:569015/1‑150 (MQ=255) ccAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑t > 1:1455365/1‑150 (MQ=255) cAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑tt > 1:26378/1‑150 (MQ=255) cAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑tt > 1:48179/1‑150 (MQ=255) aaaaGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTg < 1:866540/150‑1 (MQ=255) aaaaGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAATCCCAC‑TTg > 2:751770/1‑150 (MQ=255) aGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTg < 1:361932/150‑1 (MQ=255) ccAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGc > 1:1022241/1‑150 (MQ=255) ccAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGc < 2:1392171/150‑1 (MQ=255) cAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGc > 1:990922/1‑149 (MQ=255) aGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCg > 1:609750/1‑149 (MQ=255) gCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGaa > 2:686269/1‑150 (MQ=255) cTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAat < 1:918400/150‑1 (MQ=255) cAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAata < 1:201454/148‑1 (MQ=255) aGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATAttt < 2:467802/150‑1 (MQ=255) cGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTc < 2:935342/150‑1 (MQ=255) gTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTcc < 2:231533/150‑1 (MQ=255) gTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTc > 1:818450/1‑149 (MQ=255) gTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGGCCAGTGCCAG‑GTGCTCGGGAATAttttt > 2:1234432/1‑148 (MQ=255) tCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCa < 1:441434/150‑1 (MQ=255) tCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCa < 1:1033142/150‑1 (MQ=255) cGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCAc > 1:426854/1‑150 (MQ=255) ccGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGa > 1:1325573/1‑150 (MQ=255) cGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGa > 2:65542/1‑149 (MQ=255) cGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGa > 1:689790/1‑149 (MQ=255) gggAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATa < 2:1338093/150‑1 (MQ=255) gggAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGCCCCCG‑GTTCTGGCGAATATTTTTCACGa > 2:214041/1‑148 (MQ=255) ggAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAg < 1:310874/150‑1 (MQ=255) ggAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAg < 2:595863/150‑1 (MQ=255) ggAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGGCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAg > 2:1458029/1‑150 (MQ=255) gAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGc < 2:285927/150‑1 (MQ=255) aaaTATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATc < 2:160420/150‑1 (MQ=255) taCGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTgg > 2:296551/1‑150 (MQ=255) aCGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCCG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTTgc > 2:851316/1‑150 (MQ=255) cGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGgc < 2:1060113/149‑1 (MQ=255) cGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGgc < 2:373929/149‑1 (MQ=255) aCTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGt > 2:952165/1‑150 (MQ=255) tctTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTTCACGATAGCATCGCTTGCGCGGTCa > 2:1220758/1‑150 (MQ=255) ccAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCAcc < 2:26378/148‑1 (MQ=255) ccAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCg > 1:17781/1‑150 (MQ=255) ccAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGGCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCg > 2:173073/1‑150 (MQ=255) cAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGc > 1:244146/1‑150 (MQ=255) cAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGCCACCCGc > 1:112293/1‑150 (MQ=255) aGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTTCCAG‑TTGCCGGGGAACATTTTTCACGACAGCATCGCTGGCGCGGACACCCGcc > 2:483735/1‑150 (MQ=255) cACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAg < 1:1141543/150‑1 (MQ=255) cGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTaa > 1:908651/1‑150 (MQ=255) cccGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCgcgc > 1:714921/1‑150 (MQ=255) cccGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCgcgc > 1:1426283/1‑150 (MQ=255) cGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCg > 1:1279369/1‑150 (MQ=255) tACGAATGGATGTTCCCAGGTCACAATGAAACAGGTCGCTGACGTGGCGGTAAAATTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCGGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCCCCCGCCAGTAACCGCGCCGGAt < 1:1360755/150‑1 (MQ=255) aCGAATGGATGTCCCCAGGTCCCCATGAAACAGGTCGCTGACGTAGCGGAAAAACTATACATACGGTGGCTGGCCCAGCCCCAG‑TTGCTGGCGAATATTTCCCACGATAGCATCGCGGGCGCGGTCACCCGCCAGTAACCGCGCCGGATc < 2:1018022/150‑1 (MQ=255) cGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCa > 1:1292462/1‑150 (MQ=255) cGAATGGATGTTCCCAGGCCACCATGAAACAGGTCGCTGACGTAGCGGTAAACCTGTACATACAGTGGCTGGTCCAGTCCCAT‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCCCCCGCCAGTAACCGCGCCGGATc < 1:878748/149‑1 (MQ=255) cGAAGGGATGTTCCCAGGTCACCATGAAACGGGTCGCTGACGTGGCGGAAAAACTGTACATAAAGGGGCGGGTCCAGCCCCAG‑TTGCGGGCGAATTTTTCCCACGAAAGCATCGCTGGCGCGGTCCCCCGCCAGTAACCGCGCCGGATCa < 1:745952/150‑1 (MQ=255) aaTGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAGCTGTACATACAGTGGCTGGTTCAGTCCCAG‑TTGCTGGCGAAAATTTTCCACGATAGCATCGCTGGCGCGGGGACCCGCCAGTAACCGCGCCGGATCAc > 1:1038080/1‑149 (MQ=255) aTGGATGTTCCCAGGTCACCAAGAACGAGGGCGCTGAGGTGGAGGTAAAACTGTACATCCGGTGGCTAGTCCGGTCCGGG‑TTGCTGGGGAATATTTGCCAGAATAGCTTCGCTGCAGGGGTCCGCCGCCAGTAACCGCGCCGGATCACCa < 1:1052006/150‑1 (MQ=255) tGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAg > 2:742442/1‑150 (MQ=255) ggATGTTCCCAGGTCCCCAGAAAACAGGTCGCTGACGTAGGGGTAAAACTGTACATACAGTGGCTGGTCCAGCCCCAG‑TTGCTGGCAAATATTTTCCACGATGGCATCGCGGGCGCGGTCCCCCGCCAGTAACCGCGCCGGATCACCAgg < 1:851316/150‑1 (MQ=255) gATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCCCGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGACCACCAgg > 2:841572/1‑149 (MQ=255) gATGTCCCCAGGTCACCATGAAACGGGTCGCTGGCGTGGGGGAAAAACTGTACATACGGTGGTTGGCCAAGTCCGGT‑TGGGGGGCGATTTTTTCCCGAGATACCATCGCTGGCGCGGTCCCCCGCCAGTAACCGCGCCGGATCACCAgg < 2:574674/149‑1 (MQ=255) tGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGGCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGAt > 2:1149668/1‑150 (MQ=255) gTTCCCAGGTCACCATGAAACAGGTCGCTGACGTGGCGATAAACCTGTACATACAGTGGCTGGCCCAGCCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCCCCCGCCAGTAACCGCGCCGGATCACCAGGGAt < 2:426854/149‑1 (MQ=255) ttCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCGGGCGAATATTTCCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATc < 1:213310/149‑1 (MQ=255) cccAGGTCACCATAAAACAGGTCGCGGACGTGGCGGTAAAACTGTACAAACGGTGGCTGGCCCAGCCCCGG‑TTGCGGGCGAATATTTCCCACGATAGCATCGCGGGGGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGa < 2:1279168/150‑1 (MQ=255) ccAGGTCACCATGAAACAGGTCGCTGCCGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGCCCCAG‑TTGCTGGCAAATATTTCCCACGATAGCATCGCTGGCGCGGTCCCCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGAt < 1:1384611/150‑1 (MQ=255) cAGGTCCCAATGAAACGGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGCCCCAG‑TTGCGGGCGAATATTTCCCACGATAGCATCGCGGGCGCGGTCCCCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATg < 2:472112/150‑1 (MQ=255) aGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGc > 1:542826/1‑150 (MQ=255) cACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGc > 2:1292569/1‑146 (MQ=255) ccATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGat > 1:227881/1‑149 (MQ=255) aTGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGataa > 1:959724/1‑149 (MQ=255) gaaaaCGGGTCGCTGCCGTAGCGGAAAACCTGTACATACGGTGGCTGGTCCAGTCCCGG‑TTGCTGGCAAATTTTTCCCACGATAGCATCGCGGGCGCGGTCCCCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGataata < 2:354925/148‑1 (MQ=255) aCAGGTCGCTGACGTAGGGTTAAAACTGTACATACAGTGGTTGGTCCAG‑CCCAGTTTGTGGGAAAATTTTTCCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACg < 1:668099/150‑1 (MQ=255) cAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTTCACGATAGCATCGCTTGCGCGGTCCCCCGCCAATAACCGCGCCCGGTCACCAGGGAGCAGAAGCGAGGTAATAAACg > 2:1308111/1‑149 (MQ=255) ggTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTaa > 1:391747/1‑150 (MQ=255) ggTCGCTGACGTAGCGGAAAAACTGTACATACGGTGGCTGGTCCAGCCCCGT‑TGGCGGGAGAATATTTCCCACGATAGCATCGCGGGCGGGGTCCCCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTaa < 2:1367216/150‑1 (MQ=255) tCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTCCCACGATAGCATCGCGGGCGCGGTCCCCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATc < 1:1220758/150‑1 (MQ=255) gCTGGCATAGGGATAAATCTATACAAACAGTGGGTGGTCCAGTCCCGG‑TGGGTGGCAATTATTTCCCACGATAGAAGCGCGGGCGGGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCa < 1:751770/149‑1 (MQ=255) gCTGACGGCGCGGTAAAACTTTACATACGGGGGGTGTTCCGTCCCCGG‑TTGCTGGGGAATATTTACCACGAAAGAGTCGCTGGGGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCa < 2:555129/149‑1 (MQ=255) cTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACg > 2:613678/1‑150 (MQ=255) gACGAAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTGCCCG‑GTGGTGGCGGATATTTTTCACGATAACATCGCTGGCGCGGTCACCCGCCAGTAAAAGCGCCGGATCACCAAGGACTATATGTGGGGAAATAAACGTAAttaag > 2:1092375/1‑144 (MQ=255) aggTAGCGGAAAAATTGTAAATACGGGGGCTGGCCCAGCCCCAG‑TTGCGGGAGAATATTTCCAACGAAAGAATCGCGGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAg < 2:124428/148‑1 (MQ=255) aCGTGGCGAAAAAACTGTACATACGGGGGCTGGCCCAGTCCCAG‑TTGCGGGCGAATTTTTCCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAg < 2:331560/150‑1 (MQ=255) aCGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACg > 1:65493/1‑147 (MQ=255) gggTAAAACTTTACATACAGTGGCTGGTCCAGTCCCAT‑TTGCGGGCAAATTTTTCCCACGATAGCATCGCGGGCGGGGTCCCCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGAcgccc < 1:173073/149‑1 (MQ=255) gggTAAAACTGAACATACGGTGGCGGGTCCAGCCCCAG‑TTGCGGGGGAATATTTCCCGCGAAAACTGGGCGGGGGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGAcgccc < 2:475677/149‑1 (MQ=255) cGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGAcgccc > 1:407290/1‑150 (MQ=255) cGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCAAATATTTTCCACGATAGCATCGCTGGCGCGTTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGAcgccc < 1:514305/150‑1 (MQ=255) gatAAACCTGACCATCCATTGGTTGGTCCCGTCCTGG‑TTGTTGGAGAATATTTTCCACAATACCATCGCTGGCGGGGCCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGAcgcccg < 2:569015/148‑1 (MQ=255) cTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCcaccac > 1:117260/1‑150 (MQ=255) cTGTACATACAGTGGCTGGTCCAGTCCCAG‑GTGCTGGCGAATATTTTCCACAATAGCAGCGCTGTCGCGGCCAACCACCAGTAACCGCACCGGGTCACCAGGGATCAGATGCGGGATAAAAAACGTAAACACGCCGACCACCGccacc > 2:737584/1‑148 (MQ=255) acatacaGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAg > 1:1083630/1‑149 (MQ=255) gTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTTGCGCGGTCACCCGCCAGTAACCGCGCCGGACCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGcc > 2:241206/1‑150 (MQ=255) ggTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCcag > 1:1245643/1‑149 (MQ=255) cAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCg > 1:282601/1‑150 (MQ=255) aGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGt > 1:574586/1‑150 (MQ=255) gTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGtt > 2:360579/1‑150 (MQ=255) gTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGtt > 1:222008/1‑150 (MQ=255) tCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTg > 2:155678/1‑150 (MQ=255) tCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTg > 1:419862/1‑150 (MQ=255) | AGGGCACCAAAAGCCAGCTCCAGCGTCGCCGGGAAAAATATACGCAACTCTTCCAGCACCGGACGCCCGGTACGAATGGATGTTCCCAGGTCACCATGAAACAGGTCGCTGACGTAGCGGTAAAACTGTACATACAGTGGCTGGTCCAGTCCCAG‑TTGCTGGCGAATATTTTCCACGATAGCATCGCTGGCGCGGTCACCCGCCAGTAACCGCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTG > CP009273/1554864‑1555162 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |