| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,977,727 | A→C | 100% | I275R (ATA→AGA) | araG ← | fused L‑arabinose transporter subunits of ABC superfamily: ATP‑binding components |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,977,727 | 0 | A | C | 100.0% | 183.2 / NA | 54 | I275R (ATA→AGA) | araG | fused L‑arabinose transporter subunits of ABC superfamily: ATP‑binding components |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (31/23); total (31/23) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATATC > CP009273/1977583‑1977872 | cGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGc < 2:1440354/150‑1 (MQ=255) aaTATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATATGCTGCGCCCCATCCCTAACACACCCAACACCCCAACCAATTCCCCACTGCGAACCGCCAGACCTCTTGGCg > 1:327888/1‑149 (MQ=255) atcgatcgGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCCACCAGACCAAAAAGCCCAACAATTTCACCACTTCGAACCCCCCGACTTCTTTGCGTacg > 2:1147807/1‑150 (MQ=255) tcgatcgGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGTCTCCCGCCAAACATTCCTTTCATTAATTACCCACGACCCGCCCCCACCAAACCCAAAAGCCCCACAAATTTACCCCTGCGAACCGCCCGAATTCTTTGTGTaagc > 2:1035388/1‑150 (MQ=255) cgatcgGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTTCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCCACCAGACCCAACAGCCCCACAAATTTCCCACCGCGAAACCCCCAACTTCTTTGCGGacgca > 1:583392/1‑150 (MQ=255) gatcgGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCCACCAGACCAAAAAGCCCAAAAATTTCACCACTGCGAAACGCCAGACTTCTTTGCGGacgcac > 1:1183136/1‑150 (MQ=255) atcgGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTTCGTCCCGCCCAAAAAGGCTTTTATTAAATTGCTACGCCCCCCCCCCACCCGACCCAAAAACCCCACAAATTTACCCCCGCGGACCCCCCGACCTCTTTGCGGacgcccg > 2:1076032/1‑150 (MQ=255) tcgGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTacgcacgc < 1:1374914/150‑1 (MQ=255) gCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCCCCCCCACCAAACCAAACAGCCCAAAAATTTTACCACTGCGAAACCCCAGACTTCTTTGCGGTCGCACGCCTg > 1:407132/1‑150 (MQ=255) gTTGGTCGATATAAACCTGACCGGCGGTGATTTTCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCCCCCCCACCAAACCCAACAACCCAACAAATTTCCCCCTTCGAACCCCCCGACTTCTTTGCGTACGCCCCCCCGGTg > 1:1369825/1‑150 (MQ=255) ggTCGATATAACCCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCt < 1:633832/149‑1 (MQ=255) gATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTca < 1:642179/149‑1 (MQ=255) ggTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCTAGACGTAGgcg < 2:1060191/150‑1 (MQ=255) tGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGct > 2:447413/1‑150 (MQ=255) tGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGct > 1:1381479/1‑150 (MQ=255) gATTTCCGCCCCCCCAAACATGCTTTTCATTAATTCGCTACGCCCCG‑CCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGctcc < 1:1160190/150‑1 (MQ=255) tGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGctcctc < 2:1298446/149‑1 (MQ=255) gTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCa < 2:1459026/150‑1 (MQ=255) cccGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCAt > 2:340962/1‑149 (MQ=255) cccGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCAt > 2:809675/1‑149 (MQ=255) ccGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATaa > 2:203960/1‑150 (MQ=255) gCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAAc > 1:1137902/1‑149 (MQ=255) tGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGtt < 2:666173/150‑1 (MQ=255) gCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTAcgc > 2:1082415/1‑145 (MQ=255) ccTTTCATTAATTCGCTACGCCCCGCCCCTGCCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTg < 2:466607/149‑1 (MQ=255) ccTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTAcgcg < 1:1082415/145‑1 (MQ=255) tttCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGc > 2:283488/1‑148 (MQ=255) aTTAATTCGCTACGCCCCGCCCCTACCAGGCCAAACAGCCCAACAATTTCGCCACTGCGAACCGCCAGACTTCTTGGCGTACGCGCGCCTGGTGCTTTCACAGCATCAAGACGTGGGCGCTCCTCGCCATAACTACGCGGTTGCCAGcc < 1:552055/149‑1 (MQ=255) aTTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGa < 2:296478/150‑1 (MQ=255) cgccccgcccCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCa < 1:1076032/150‑1 (MQ=255) gccccgccccTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCaa > 1:649036/1‑150 (MQ=255) ccccgccccTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAAt > 1:116395/1‑150 (MQ=255) cccgccccTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACTCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATg > 1:592925/1‑150 (MQ=255) cccgccccTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATg > 1:1078262/1‑150 (MQ=255) cccTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTcgcg > 2:849264/1‑150 (MQ=255) cccTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTcgcg > 1:232443/1‑150 (MQ=255) cTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGcc < 2:1183136/150‑1 (MQ=255) aCCAGACCAAACAGGCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGccc > 1:1143540/1‑149 (MQ=255) aCCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGccc > 2:159513/1‑149 (MQ=255) aGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGAc > 2:668071/1‑149 (MQ=255) aCAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCt > 1:593810/1‑150 (MQ=255) cAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTg > 1:275572/1‑150 (MQ=255) ccAACAATTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCAcc < 2:583392/150‑1 (MQ=255) caacaaTTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCa < 2:649036/150‑1 (MQ=255) aacaaTTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAg > 2:444561/1‑150 (MQ=255) aTTTCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGcgcg > 1:1383402/1‑150 (MQ=255) tCACCACTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGcgtc < 2:1369825/149‑1 (MQ=255) accacTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTg < 2:407132/150‑1 (MQ=255) accacTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTg < 1:1035388/150‑1 (MQ=255) cTGCGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCa < 2:1133487/150‑1 (MQ=255) cGAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAAcc > 2:261314/1‑150 (MQ=255) gAACCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACct > 2:183963/1‑150 (MQ=255) aaCCGCCAGACTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACctg < 1:161078/150‑1 (MQ=255) aCTTCTTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATATc < 1:183963/150‑1 (MQ=255) | CGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTACGCACGCCTGGTGCTTTCACAGCATCAAGACGTAGGCGCTCCTCGCCATAACTACGCGGTTGCCAGCCGTAGATATCGCCAATGTCGCGCCCGACCATCGCCTGCACCAGCGCGTCGTGGTCAACCTGCTGCATATC > CP009273/1977583‑1977872 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |