| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,141,233 | T→G | 7.0% | S598S (TCA→TCC) | ppc ← | phosphoenolpyruvate carboxylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,141,233 | 0 | T | G | 7.0% | 635.8 / 2.7 | 216 | S598S (TCA→TCC) | ppc | phosphoenolpyruvate carboxylase |
| Reads supporting (aligned to +/- strand): ref base T (113/82); new base G (6/13); total (119/97) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.13e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 223 total aligned reads displayed.
TCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCC > CP009273/4141084‑4141382 | ccGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTtgt > 2:739491/1‑149 (MQ=255) cggcggTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTtgt < 1:1157609/148‑1 (MQ=255) cggcggTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGa < 2:231961/150‑1 (MQ=255) gcggTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGAca < 2:821270/150‑1 (MQ=255) cggTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGAcag < 1:69465/150‑1 (MQ=255) ggTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGAcag > 1:280871/1‑149 (MQ=255) ggTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGAcag > 1:1395320/1‑149 (MQ=255) gTGGCAGCAGGTTGGCTTCCAGAATCGCCGCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTCAcagca < 1:494516/150‑1 (MQ=255) tGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGAcagcag > 2:398878/1‑150 (MQ=255) gcagcaGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACagcagc < 1:1041217/149‑1 (MQ=255) gcagcaGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAgcg < 1:597473/150‑1 (MQ=255) cagcagGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAgcgc > 2:1202662/1‑150 (MQ=255) agcagGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGcgcc < 1:1082242/150‑1 (MQ=255) gTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCAt > 1:619274/1‑149 (MQ=255) gTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATg < 2:463936/150‑1 (MQ=255) cTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAg < 2:1354775/150‑1 (MQ=255) cTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAg < 2:845727/150‑1 (MQ=255) cTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAg < 1:20056/150‑1 (MQ=255) cTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGGGACAGCAGCGCCGCATGAGCAg > 1:812448/1‑150 (MQ=255) ttCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAgg > 1:618001/1‑150 (MQ=255) tCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCCTGAGCAGGt > 2:1420024/1‑150 (MQ=255) ccAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGt < 2:1329020/149‑1 (MQ=255) cAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTgc < 1:334563/150‑1 (MQ=255) cAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTgc < 1:972928/150‑1 (MQ=255) cAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTg < 1:1110792/149‑1 (MQ=255) cAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTg < 1:1303630/149‑1 (MQ=255) aGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACACCAGCGCCGCATGAGCAGGTgcg > 2:733614/1‑150 (MQ=255) aaTCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGcgcc < 2:41844/150‑1 (MQ=255) aaTCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGcgcc > 1:589957/1‑150 (MQ=255) cGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGcgccgcc > 2:614770/1‑150 (MQ=255) cccGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCcgcg < 2:278680/150‑1 (MQ=255) ccGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGa > 1:963696/1‑150 (MQ=255) cGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGAc > 1:1124165/1‑150 (MQ=255) tataAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCaa < 1:715223/150‑1 (MQ=255) tataAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCaa > 1:1201197/1‑150 (MQ=255) taAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAAt < 2:272892/149‑1 (MQ=255) taAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATg < 1:741513/150‑1 (MQ=255) taAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCCACCAATg > 2:1461150/1‑150 (MQ=255) aaaGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCCGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCCGCGCCGCATGAGCAGGTGCTCCGCCGCGACCAATg > 2:361165/1‑149 (MQ=255) gCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAAc < 2:1124165/150‑1 (MQ=255) aCAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAAccgc < 2:280871/150‑1 (MQ=255) cAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAAccgcc < 1:1192593/150‑1 (MQ=255) cAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAAccgcc < 1:367821/150‑1 (MQ=255) ggCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACcgccgc > 2:100362/1‑150 (MQ=255) gctgctGAGGGTGTTTTCTGGCAGACAATTTTTAAAGCGGATCACCCCCCCCTTTTGGGTTACGCGCAGGCCGCTTTTCGGGT‑TTCCTGGGGGTTGGGACAGCAGCGCCGCAGGAGCAGGTGCGCCGCCGCGACAAATGGAACCGCcgcg < 2:592680/150‑1 (MQ=255) cGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTgg > 1:763577/1‑149 (MQ=255) ttgttttGTGGCAGCCCATTTTTAAGGCGGTTCTCCCCCCCCTTTTGGTTTCCGCGCGGCCCCCCTTCCAGGC‑TCCCTGGCGTTTGTGACAGCCGCCCCGCATGGGCGGGCGCCCCGCCGCCCCCAATGAAACCGCCGCGACCGTGGaac < 2:302381/146‑1 (MQ=255) tgttttCGGGCAGACAATTTTAAAAGGGAATCACCCCGCCTTTTTGGGTTGCGCGCGGGCCGCTTTTCGGGC‑TTCGGGGCGGTTGAGAAAGCGGCGCGGCAGGAGGGGGGGCGCGGCCGCGACCAATGGAGCCGCCGCGACCGTGGaaca < 2:582625/147‑1 (MQ=255) aTTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGaacaac > 1:850385/1‑150 (MQ=255) tttCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACg > 1:1345330/1‑150 (MQ=255) cTGGCAGACCATATTTAAAGCGGCTCATCTCTCCCTTTTCTTTTACGCGCAGGCCGCCTTTCCTTC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGaaccccct > 1:470547/1‑143 (MQ=255) cTGGCAGACAATATTAAAGGCGGATCATCTCGCCTTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCGGGCGGTTGTGACAGCAGCGCCGCATGAGCGGGTGCGCCGCCGCGCCCAATGGAACCGCCGCGACCGTGGAACAACGTc < 1:477118/149‑1 (MQ=255) tGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGCGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAg > 1:548704/1‑150 (MQ=255) tGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCAAGAGCCGGAGCGCCGCCCCGACCAATGGAACCGCCGCGACCGTGGCACAACGTCAg > 2:1316662/1‑150 (MQ=255) gggCAGCCAATATTAAAAGCGGATCATCTCGCCCTGTTCGGTTCCGCGCGGGCCGCCTTTCAGGC‑TTCCGGGGGGTTGTGACAGCGGCGCCGCAGGAGCGGGGGCGCCGCCGCGCCCAATGGAACCGCCGCGACCGTGGAACAACGTCa < 1:648095/148‑1 (MQ=255) gggCAGACAATTTTAAAGGGGGATCCCCTCGCCCTGTTCGGTTCCGCGCGGGCCGCC‑TTCAGGCTTTCGGGGCGGTTGTGACAGCGGCGCCGCAGGAGCGGGCGCCCGGCCGCGCCAAATGAAACCGCCGCGACCGTGGAACAACGTCAg < 2:1214512/149‑1 (MQ=255) aCCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCaa > 1:1254012/1‑149 (MQ=255) aCCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCaa > 2:1288165/1‑149 (MQ=255) ccATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATa > 2:787839/1‑150 (MQ=255) cATTTTTAAGGCGAATCATCCCGCCCTTTTCGTTTACGCGCGGCCCGCCTTTCAGGC‑TTCCTGGGGGTTTAGACAGCAGCGCCCCTTGCGCGGTGGCGCCGCCGCAACCAATGGAACCGCCGCGATCGTGGAACAACGTCAGCTCAATAc < 2:1089651/150‑1 (MQ=255) cATATTTAAGGCGGTTCATCTCGCCCTGTTCGGTTCCGCGCGGGCCGCCTTTCAGGC‑TCCCGGGCGGTTGTGACAGCGGCGCCGCATGAGCAGGTGCGCCGCGGCGACAAAGGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATAc < 1:948339/150‑1 (MQ=255) cATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGGGGAACAACGTCAGCTCAATAc > 2:52017/1‑150 (MQ=255) tttAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCCACCGTGGAACAACGTCAGCTCAATACCCGc > 1:114015/1‑150 (MQ=255) ttAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCt > 2:717663/1‑150 (MQ=255) aaaGCGGATCATCTCGCCTTGTTCGTTTCCGCGCGGGCCCCTTTTAAGCT‑TTCCGGGGGGTTGTAACAGCAGCGCCGCATGAGCAGGGGCCCCGCCGCAACAAAGGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCttt < 1:498837/150‑1 (MQ=255) aaGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCtttt > 2:37317/1‑150 (MQ=255) cGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCg > 1:490788/1‑150 (MQ=255) gATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCg > 1:774033/1‑148 (MQ=255) gATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGGGACAGCAGCGGCGCATGAGCAGGTGCGCCGCCGCGGACAATGGAAACCCCGCGACCGCGGGACAACCTCAGCTCAATACCCGCTTTTTCg > 2:87615/1‑148 (MQ=255) atcatcTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAg > 1:1218565/1‑150 (MQ=255) atcTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGtt > 2:1376806/1‑150 (MQ=255) cGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGAGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGa > 1:255844/1‑150 (MQ=255) cccTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGAt > 1:121454/1‑149 (MQ=255) ccTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGGGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGAtt > 1:522660/1‑149 (MQ=255) cTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑GTCTCGCCGGATGTGACAGCAGCGTCGCATGAGTAGGTGCGCCTCCGCGACCAATGGAACCGCCGCGACCGCGGTACAACGTCAGATCAATACCCGCTTTTTCGCAGGTTTTGATTaa > 1:1092300/1‑150 (MQ=255) cTGTTCGGTTACGCGCAGGCCGCCCTTCAGGC‑TTCCTGGCGGTTGGGACAGCAGCGCCGCATGAGCAGGCGCGCCCCCGCGAACAATGGAACCGCCGCGACCGTGGAACAACGCCAGCTCAATACCCGACTTTTCGCCGGATTTGATTaa > 1:1416864/1‑150 (MQ=255) ttgggTTACGCGCAGGCCGCTTTTCAGGC‑TCCCGGGGGGTTGTGACAGCAGCGCCGCAGGAGGGGGGGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAAt < 1:1213272/145‑1 (MQ=255) ttCGGTTACGCGCGGGCCGCTTTTCAGGC‑TTCCGGGGGGTTGTGACAGCGGCGCCGCATGAGCAGGTGCGCCGCCGCGCCCAATGGAACCGCCGCGACCGTGGAACAACGTCTGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAAt < 1:105235/148‑1 (MQ=255) tCGTTTACGCGCGGCCCGCTTTCCAGGC‑TCCCGGGGGTTTGGGACAGCGGCCCCGCAGGAGCGGGGGCGCCGCCGCGACAAAGGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGc < 1:343712/149‑1 (MQ=255) gggTTCCGCGCGGCCCCCCTTTCAGGT‑TTCCGGGGGGTTGTGACAGCGGCGCCGCATGAGCGGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCAt < 1:270889/149‑1 (MQ=255) ttcagcgcAGTCCGCCTTTGAGCT‑TCCCGGGCGGTTGTGAAAGCAGCGCCGAATGAGGAGTTGCGCCGCCGCCGCGAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCt < 1:886279/146‑1 (MQ=255) ttACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGGGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCt > 1:221760/1‑150 (MQ=255) ggcgaAGCCCGCCTTTAAGGC‑TTCCTGGGGGTTGTGACAGCAGCGCCGCATGAGGGGGTGCGCCGCCGCGACAAAGGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCtgt < 1:1300654/148‑1 (MQ=255) cgcgcgGCCCCCCTTTCGGCC‑TTCCTGGCGTTTGTGACAGCAGCCCCGCAGGGGCAGGTGCGCCGCCGCGCCCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCtgtg < 2:1406279/150‑1 (MQ=255) gcAGGCCGCCTTTCAGGC‑TTCCTGGCGTTTGTGACAGCAGCCCCGCAGGAGCGGGTGCGCCGCCGCGACAAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCt < 1:100362/150‑1 (MQ=255) gcAGGCCGCCTTTCAGGC‑TTCCGGGGGGTTGTGACAGCGGCGCCGCAGGAGCGGGTGCGCCGCCGCGCCCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCt < 2:561593/150‑1 (MQ=255) gcAGCCCGCCTTTCAGGC‑TTCCGGGGGTTGGTGACAGCGGCGCCGCAGGGGCGGGTGCGCCGCCGCGACAAATGGAACCGCCGCGACCGTGGTACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCt < 2:1050247/150‑1 (MQ=255) cAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCt > 2:881045/1‑149 (MQ=255) cgccTTTCAGGC‑TTCCTGGCGGTTGGGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATAtt > 1:304204/1‑150 (MQ=255) ccccTTGCAGGC‑TCCGGGGCGGTTGTGACAGCCGCGCCGCATGGGCAGGTGCGCCCCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATAtt < 2:490836/148‑1 (MQ=255) gccTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTg > 1:628347/1‑150 (MQ=255) tCAGGC‑TCCCTGGGGGTTGTGACAGCGGCGCCGCATGAGCGGGGGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGcc < 1:1444558/149‑1 (MQ=255) c‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGGGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAgg > 1:728894/1‑148 (MQ=255) ctggggggTTGGGACAGCGGCCCCGCATGGGCGGGTGCGCCGCCGCGCCAAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGc < 2:1222148/143‑1 (MQ=255) ccTGGCGGTTGGGACAGCGGCGCCGCAGGAGCAGGGGCGCCGCGGCGCCCAATGGACCCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGc < 2:1164436/149‑1 (MQ=255) gggggTTGTGACAGCGGCGCCGCAGGGGCAGGTGCCCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGcc < 2:634008/147‑1 (MQ=255) ggCGTTTGTGCAAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGCCAAATGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGcc < 2:1247027/150‑1 (MQ=255) ggCGGTTGTTGGGGCAGCGCAGCTGGAGCAGGTGCCCCCCGGCGCCCAATGCAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGcc < 1:413101/150‑1 (MQ=255) gggtttGTGACACCAGCGCCGCAGGGGCGGGTGCCCCGCCGCGCCCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCa < 1:17228/146‑1 (MQ=255) tgACAGCGGCCCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGACCCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTcc < 2:470547/150‑1 (MQ=255) | TCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGC‑TTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCC > CP009273/4141084‑4141382 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |