| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | CP009273 | 4,053,617 | IS4 (+) +12 bp | 30.6% | intergenic (+27/‑179) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4053617 = | 84 (1.600) | 42 (0.730) | 40/276 | NT | 31.3% | intergenic (+27/‑190) | typA/yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| ? | CP009273 | 4491907 = | NA (NA) | noncoding (1426/1426 nt) | IS4 | repeat region | |||||
| * | ? | CP009273 | = 4053628 | 84 (1.600) | 32 (0.560) | 30/276 | NT | 25.8% | intergenic (+38/‑179) | typA/yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| ? | CP009273 | = 4493332 | NA (NA) | noncoding (1/1426 nt) | IS4 | repeat region | |||||
CAAAAAAGAAAGCAATTAACGGCGTATGACTTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4053758‑4053617‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAAGATCGCGCA > CP009273/4491907‑4492050 CAAAAAAGAAAGCAATTAACGGCGTATGACTTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCA < 1:334523/150‑1 AAAGAAAGCAATTAACGGCGTATGACTTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGT > 1:657619/1‑148 AAGCAATTAACGGCGTATGACTTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAA < 1:437566/150‑1 AAGCAATTAACGGCGTATGACTTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGAGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTT > 2:350730/1‑148 AGCAATTAACGGCGTATGACTTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAG > 1:241491/1‑150 AGCAATTAACGGCGTATGACTTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAG > 1:518308/1‑150 GCAATTAACGGCGTATGACTTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAG > 2:716520/1‑149 TAACGGCGTATGACTTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACT > 1:784381/1‑149 ACGGCGTATGACTTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGAC > 1:989727/1‑150 CGGCGTATGACTTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACT > 1:948902/1‑150 GGCGTATGACTTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTG > 1:847549/1‑150 TATGACTTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTC < 1:179776/150‑1 TTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTC > 1:763919/1‑150 GCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGG < 1:238178/149‑1 ATAATTGCGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTG > 1:798596/1‑150 TGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGT < 1:575061/149‑1 CAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTT < 1:67114/150‑1 CAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTT < 2:362031/150‑1 AAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCC < 1:851752/150‑1 AGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTC > 2:969277/1‑148 CTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGG < 2:733818/150‑1 TATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGC < 1:350730/147‑1 GACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCC < 2:241491/149‑1 ACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCAAGGGCCTCTCCT < 1:744815/149‑1 CACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACT < 1:124358/150‑1 GACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCG > 2:834916/1‑150 TAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGG > 2:791994/1‑150 GGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCC > 2:961993/1‑150 GGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCT < 2:753281/150‑1 GAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTT < 1:655151/150‑1 AGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTT > 1:70240/1‑150 ACTCGCATTTGTGTTCGCTCACCCCCCTCAAAAAAACACCTGCCCTCGCTGGCTAATGCCAGTCCGTTTATCAACTGACTGGCTCTTTTTCGGGGCTGTGCGGTCTTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCC < 1:233526/149‑1 GCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCT < 1:221168/149‑1 ATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGT < 2:518308/150‑1 GTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTC > 1:794951/1‑135 TGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAAT < 2:253545/150‑1 TGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCC < 2:794951/135‑1 GCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTC < 2:70240/150‑1 AAAACCTGCCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTT < 1:968628/150‑1 CCATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGC > 1:265828/1‑144 ATCGCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAAGATCGC < 1:855244/150‑1 GCTGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAAGATCGCGCA > 2:133614/1‑150 CAAAAAAGAAAGCAATTAACGGCGTATGACTTTGCAGATAATTGTGACAAAGCTCTCTATTGACGTAACCACAGACTTATAAGGGAGATACTCGCATTGGTGTGCGCTCACGACAGGCAAAAAAAAACCTGCCATCGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4053758‑4053617‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAAGATCGCGCA > CP009273/4491907‑4492050 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |